Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25110 551 / 0 CIPK25, SnRK3.25 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) AT5G10930 537 / 0 CIPK5, SnRK3.24 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) AT2G25090 450 / 8e-156 CIPK16, SnRK3.18 SNF1-RELATED PROTEIN KINASE 3.18, CBL-interacting protein kinase 16 (.1) AT5G45820 416 / 2e-142 PKS18, CIPK20, SnRK3.6 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) AT5G58380 402 / 7e-137 PKS2, CIPK10, SnRK3.8, SIP1 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) AT5G07070 390 / 2e-132 CIPK2, SnRK3.2 SNF1-RELATED PROTEIN KINASE 3.2, CBL-interacting protein kinase 2 (.1) AT1G01140 369 / 6e-124 PKS6, CIPK9, SnRK3.12 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) AT4G30960 364 / 2e-122 CIPK6, SIP3, SnRK3.14, ATCIPK6 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) AT2G26980 360 / 1e-120 CIPK3, SnRK3.17 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) AT4G18700 353 / 1e-117 ATWL4, CIPK12, SnRK3.9 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024448 [exp] 743 / 0 AT5G25110 654 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Lus10024075 [exp] 479 / 2e-167 AT5G10930 572 / 0.0 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) Lus10022749 [exp] 424 / 7e-146 AT5G58380 598 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10014163 [exp] 412 / 1e-140 AT5G58380 592 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10041653 [exp] 397 / 1e-136 AT5G10930 490 / 1e-173 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) Lus10007283 [exp] 396 / 8e-135 AT5G45820 578 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Lus10021852 [exp] 377 / 3e-127 AT4G30960 658 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10036280 [exp] 374 / 2e-126 AT4G30960 662 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10042229 [exp] 365 / 2e-122 AT5G58380 676 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G263500 [exp] 595 / 0 AT5G25110 568 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Potri.018G019900 [exp] 582 / 0 AT5G10930 576 / 0.0 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) Potri.003G181900 [exp] 506 / 7e-178 AT5G25110 460 / 2e-159 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Potri.016G133500 [exp] 424 / 2e-145 AT5G58380 593 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.019G127500 [exp] 416 / 2e-142 AT5G58380 641 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.013G156000 [exp] 416 / 2e-142 AT5G58380 623 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.011G067500 [exp] 410 / 2e-140 AT5G45820 647 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Potri.019G048800 [exp] 404 / 4e-138 AT5G58380 539 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.011G067600 [exp] 385 / 5e-129 AT4G18700 720 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Potri.004G058300 [exp] 376 / 4e-126 AT4G18700 735 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0573 [flax] [poplar] KA1-like PF03822 [flax] [poplar] NAF NAF domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10007448 pacid=23178397 polypeptide=Lus10007448 locus=Lus10007448.g ID=Lus10007448.BGIv1.0 annot-version=v1.0 ATGGATGAGGAGACGAGGCAGGTTCTGTTTGGCAAATACGAGACCGGAAGATTACTCGGGAAAGGAACTTTCGCCAAGGTCTACTACGCCAAACACCTCG TCACCGGCGAGAGCGTTGCTATCAAACTCATCAACAAGGACCAGGTCAAGAAACAAGGTCTCATCGACCAGATCCAGCGTGAAATCTCCGTTATGCACCT TGTCCGCCATCCCAACGTCGTCGAGCTCAAGGAAGTCATGGCTACCAAGTCCAAGATCTTCTTCGTTATGGAGTACGTCCGCGGTGGGGAGCTCTTCGCC AAGGTCGCCAGGGGGAGACTCAAAGAAGACTCCGCCAGGAAGTACTTTCAGCAGCTTATTAGCGCCGTCGATTTCTGCCACAGCAGGGGCGTCTCCCACC GCGACTTGAAGCCCGAGAACCTCCTTTTGGATGAGAACGAGAATCTCAAGGTCTCCGACTTTGGCCTCTCCGCTCTCCCCGAACAGCTGCTCAACGACGG ACTCTTGCACACTCAGTGCGGCACCCCTGCCTACGTGGCGCCGGAGGTCTTGAGGAAGAAAGGATACGACGGAGCCAGAGCGGATCTCTGGTCCTGCGGA GTTATTCTGTTTGTCCTCCTCGCTGGATTCCTTCCCTTTCAGGACGAGAACCTGATGAAGATGTATCGCAAGATTTTCAAGGCGGAGTTCGACTGTCCAC CGTGGGTTTCCGCCGAGGCGAGGCGGTTGATTTCGAAGCTCCTGATGGCGGATCCGGCTCGGAGAATCACTGTCCCAGCGATTATGCGAGCTCCTTGGTT CAGGAAGGGGCTTTCCCGACCGGATTCAATTCCGATTGAGAATAATCCAGAAGAAGAGAGCGGAGGAGAGGGAGGTAATAATAGTAATAACAGCTGCAGC GATAGCGACAACTCGTCGGCCAATTCGATTCCGAGCAGTACAAAAATCTCGTCTCCAAAATTCTTCAACGCGTTCGAGTTCATCTCGTCGATGTCGTCCG GATTCGATTTGTCAAGCCTCTTCGAAACGAAGAGGCGGCGAGGATCTATATTCACGTCGCGGAGCTCGGCGAGCGCGATTATGGCAAGGATCGAAGGATT CGCCAAGGGGATTAATTTCAGGGTGGGGAAGGTAAAGGATTTCAAGATGACTTTAGTAAGGGAGTGTGAAGGGAGGAAAGGACGACTGTCAGTGACGGCG GAGGTGTTCGAGGTGGCGCCGGAAGTGGCAATCGTGGAGTTCACCAAGTCGGCCGGCGACACGTTGGAGTATGCAAAGTTCTGTGAAGAAGAGGCCAGGC CGGCGTTGAAGGACATAGTGTGGACTTGGCAAGGGGACCCCGTTTGTAACGGTAACGGTACTGCTAACGGTTGCGGGGAAGACCATCCAAAAGGGCCAAT ATTGATGTAG
AA sequence Show only first row Show all	>Lus10007448 pacid=23178397 polypeptide=Lus10007448 locus=Lus10007448.g ID=Lus10007448.BGIv1.0 annot-version=v1.0 MDEETRQVLFGKYETGRLLGKGTFAKVYYAKHLVTGESVAIKLINKDQVKKQGLIDQIQREISVMHLVRHPNVVELKEVMATKSKIFFVMEYVRGGELFA KVARGRLKEDSARKYFQQLISAVDFCHSRGVSHRDLKPENLLLDENENLKVSDFGLSALPEQLLNDGLLHTQCGTPAYVAPEVLRKKGYDGARADLWSCG VILFVLLAGFLPFQDENLMKMYRKIFKAEFDCPPWVSAEARRLISKLLMADPARRITVPAIMRAPWFRKGLSRPDSIPIENNPEEESGGEGGNNSNNSCS DSDNSSANSIPSSTKISSPKFFNAFEFISSMSSGFDLSSLFETKRRRGSIFTSRSSASAIMARIEGFAKGINFRVGKVKDFKMTLVRECEGRKGRLSVTA EVFEVAPEVAIVEFTKSAGDTLEYAKFCEEEARPALKDIVWTWQGDPVCNGNGTANGCGEDHPKGPILM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25110		CIPK25, SnRK3.2...	SNF1-RELATED PROTEIN KINASE 3....		Lus10007448 [exp]	0	1
AT5G10530			Concanavalin A-like lectin pro...		Lus10016833 [exp]	5.3	0.7876
AT3G57340			Heat shock protein DnaJ, N-ter...		Lus10030079 [exp]	7.8	0.7925
AT3G61320			Bestrophin-like protein (.1)		Lus10037849 [exp]	8.4	0.7786
AT5G12890			UDP-Glycosyltransferase superf...		Lus10025513 [exp]	8.7	0.7416
AT1G13900			Purple acid phosphatases super...		Lus10037091 [exp]	9.9	0.7687
AT2G43250			unknown protein		Lus10040469 [exp]	12.7	0.7736
AT4G22240			Plastid-lipid associated prote...		Lus10001099 [exp]	17.0	0.7800
AT4G29680			Alkaline-phosphatase-like fami...		Lus10008562 [exp]	17.9	0.7831
AT5G56180		ATARP8	actin-related protein 8 (.1.2)		Lus10027083 [exp]	18.8	0.7608
AT3G02910			AIG2-like (avirulence induced ...		Lus10040635 [exp]	21.0	0.7650

Compare expression of checked genes

Lus10007448 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.