Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25150 938 / 0 TAF5 TBP-associated factor 5 (.1) AT5G67320 114 / 3e-26 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT4G02730 109 / 7e-26 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 108 / 1e-25 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 109 / 3e-24 Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 108 / 4e-24 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 107 / 8e-24 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G61210 106 / 2e-23 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT2G41500 105 / 3e-23 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT2G43770 101 / 6e-23 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024447 [exp] 1353 / 0 AT5G25150 1006 / 0.0 TBP-associated factor 5 (.1) Lus10021059 [exp] 121 / 2e-28 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10014674 [exp] 110 / 3e-26 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10004167 [exp] 114 / 5e-26 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10006916 [exp] 109 / 6e-26 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10024972 [exp] 111 / 3e-25 AT5G67320 819 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Lus10039636 [exp] 106 / 9e-25 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10018458 [exp] 111 / 1e-24 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011224 [exp] 111 / 1e-24 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G263400 [exp] 1026 / 0 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.018G020200 [exp] 1024 / 0 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.005G148500 [exp] 121 / 6e-30 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 120 / 1e-29 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G050100 [exp] 116 / 5e-27 AT5G67320 645 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.005G144400 [exp] 116 / 6e-27 AT5G67320 671 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.007G009500 [exp] 107 / 5e-25 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G045800 [exp] 107 / 4e-24 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.010G255400 [exp] 106 / 2e-23 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G045500 [exp] 106 / 3e-23 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0186 [flax] [poplar] PF04494 [flax] [poplar] TFIID_NTD2 WD40 associated region in TFIID subunit, NTD2 domain
Representative CDS sequence Show only first row Show all	>Lus10007449 pacid=23178402 polypeptide=Lus10007449 locus=Lus10007449.g ID=Lus10007449.BGIv1.0 annot-version=v1.0 ATGGACGAGGAGCAAGTTGTGAAATTTGTCGAAACTTACTTGAAGAAGAAAGGCTTCAAGCAAGCGGAGCTTGCTTTCCACGATGAAGTTCAGAAAAACT CCAATGCCAGCTCAATCAATATCCATACTGACCCGGACCTCTCAAATCTCCTTCTCTCACTCTCGCAGTCAGAGGACAGTTCAGGAAGGTACCATGAAGA GTATGGTAAATTGAGGGCGTGGAGCTATAATTCGCTTGATTTGTACAGGCATGAGCTGCTACGGGTGCTCTATCCTGTATTTATTCATTGCTACATGGAT CTAGTGGCAAAAGGCCATATTCAAGATGCTAGAACCTTCTTCAATACCTTCCGTGAAGACCATGAAATGATTCATTCCAGAGACCTTCAGAAGTTGGAAG GAGTTCTCTCACCCTCTCATCTACAGGTTCAGACTGCAGAAAGCCTTAAATCTGTTTTAAAGACTTCTGCTATCATGTATATTAAGTTTGGATCCAATCG AGGCAAGATAAGTTATGCTTCTCATGCTCTTGCTCTTTTTCAGGAGATGGAATTTGCGCATACGCTTAGGAAAAGCAAAGTCAACATAAAGATGTGCGAG TATTCCAATGAGCTCCTGATGCAGCATCTTCTGAAGACAAAATCTACCACAGTGCTTGGAATTATCAATGAACGCATTAACTTCCAAGTTTCTCCTGGAC AACCAGGTTCCATTTTGGATGATGCCGAGGTTGTGACACTGATTGGAAGCACCCAGGATACAGCGAATCAGATTAACAAGAAAGAAGTACATTGGGGGCT ACTTGAAGATTCTATGGAAGATCGGTTGGAAAAGGCTGGGGGTTTGAATTCTGATGCAGAGAAACCAGAAGGAGAAGCAAAAGATGGCGAGATTGATGAT AACAAGAAACGATTAGCAGAGGGTGGGAAGCAAGGTGCTTCTTCCAAAAAGTTTAAGAAGGACAAAACAGCTGGAGCATCAGCAAAAGTTGCTCGACCTG AAACTGTTGCTGCACCTGCTGCCCCTCGAGTCAAACCGGAGCTTCCTTTGCCAAAAGTTTGTTCCATTAGGCCAGCAGAAGTTGAGCAGTCAATCCTTGA GGACTTAAGAAACCGTGTTCAGTTAAGCAGTGCAGCACTCCCTTCAGTCAGTATGTACACATTTCTCAACACCCATAACAGTTTGAACTGTTCCTCAATA TCAAATGATGGATCCTTAGTTGCTGGTGGATTTTCAGACTCGTCCCTTAAGGTGTGGGATATGGCTAAACTTGGACATCAAACTAGCAGTTCTGCTTTGC AGGCTGAAAATGAGATCTCTGGTGAGCACATACAAGGGCCAAACGGTAGCAAAAGATTGTACACATTGTTACAGGGCCATTCGGGTCCCGTTTATTCAGC CACTTTCAGTCCTCTTGGGGATTTCATTCTTTCATCTTCTGCGGACACAACGATCAGACTGTGGAGCACAAAACTAGATGCCAACCTGGTTTGTTACAAG GGTCATAATTACCCTGTCTGGGATGTACAGACATTAAAAAGGGATGAGCTTTATACTATTTATGTGGACAGATACTCGTGTATGACTACAACATTAACTA TACTGTTGCAGTTTAGTCCCGTTGGACATTACTTCGCAAGCGCTTCTCATGATCGAACTGCAAGAATTTGGTCAATGGACAGAATACAACCATTAAGGAT AATGGCAGGTCACTTGTCTGATGTGGACTGTGTGCAATGGCATGCCAACTGCAACTACATTGCTACTGGGTCGAGCGACAAAACTGTAAGACTGTGGGAT GTACAGAGTGGGGAGTGTGTGAGGGTTTTCATTGGGCATAGGAGCATGATAGTGTCGCTGGCGATGTCACCTGATGGCCGATATATGGCATCTGGTGATG AAGATGGTGCTATCATGATGTGGGACCTTTCAAGCGGCCGCTGTGTTTCACCGCTGATGGGCCATAACTCATGCGTGTGGAGCCTTGCTTTCAGTTCTGA AGGTTCTCTTATGGCATCGGGTTCAGCGGATTGCACAGTGAAACTGTGGGATTTAAATACGAGCACCAAGGCTACGAAAACTGACGAAGCAGCGAAAAGT GGAAACAACACAAGCAGATTGAGATATCTGAAGACACTGGCAACAAAGTGTACTCCGGTTTACGCTTTGAAGGTACGCAGTAGTAGTTGTATGTGGCTTG ACTTCTCTGGGGTTCTACTTGGCTTCTCTGCGGTTCTACTAGGCTTTCGTGTTTCTGCGTTACAACATCACTTGATTGACCTGTTGTTGTTGGTGGTGGT GCAGTTTTCAAGAAGTAATCTTCTATTTGCAGCTGGCGTCCTCTCCAAGAATGGATGA
AA sequence Show only first row Show all	>Lus10007449 pacid=23178402 polypeptide=Lus10007449 locus=Lus10007449.g ID=Lus10007449.BGIv1.0 annot-version=v1.0 MDEEQVVKFVETYLKKKGFKQAELAFHDEVQKNSNASSINIHTDPDLSNLLLSLSQSEDSSGRYHEEYGKLRAWSYNSLDLYRHELLRVLYPVFIHCYMD LVAKGHIQDARTFFNTFREDHEMIHSRDLQKLEGVLSPSHLQVQTAESLKSVLKTSAIMYIKFGSNRGKISYASHALALFQEMEFAHTLRKSKVNIKMCE YSNELLMQHLLKTKSTTVLGIINERINFQVSPGQPGSILDDAEVVTLIGSTQDTANQINKKEVHWGLLEDSMEDRLEKAGGLNSDAEKPEGEAKDGEIDD NKKRLAEGGKQGASSKKFKKDKTAGASAKVARPETVAAPAAPRVKPELPLPKVCSIRPAEVEQSILEDLRNRVQLSSAALPSVSMYTFLNTHNSLNCSSI SNDGSLVAGGFSDSSLKVWDMAKLGHQTSSSALQAENEISGEHIQGPNGSKRLYTLLQGHSGPVYSATFSPLGDFILSSSADTTIRLWSTKLDANLVCYK GHNYPVWDVQTLKRDELYTIYVDRYSCMTTTLTILLQFSPVGHYFASASHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWD VQSGECVRVFIGHRSMIVSLAMSPDGRYMASGDEDGAIMMWDLSSGRCVSPLMGHNSCVWSLAFSSEGSLMASGSADCTVKLWDLNTSTKATKTDEAAKS GNNTSRLRYLKTLATKCTPVYALKVRSSSCMWLDFSGVLLGFSAVLLGFRVSALQHHLIDLLLLVVVQFSRSNLLFAAGVLSKNG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25150		TAF5	TBP-associated factor 5 (.1)		Lus10007449 [exp]	0	1
AT1G69020			Prolyl oligopeptidase family p...		Lus10026683 [exp]	3.9	0.8621
AT2G23740	C2H2ZnF	AtCZS	nucleic acid binding;sequence-...		Lus10016788 [exp]	4.9	0.8789
AT1G33410		NUP160, SAR1, A...	ARABIDOPSIS NUCLEOPORIN 160, S...		Lus10039130 [exp]	6.8	0.8931
AT5G43130		TAF4, TAF4B	TBP-associated factor 4B, TBP-...		Lus10033265 [exp]	7.7	0.8662
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10024063 [exp]	8.2	0.8485
AT5G58450			Tetratricopeptide repeat (TPR)...		Lus10042248 [exp]	9.6	0.8860
AT3G10650		AtNUP1	unknown protein		Lus10043447 [exp]	9.6	0.8784
AT2G17410	ARID		ARID/BRIGHT DNA-binding domain...		Lus10022981 [exp]	10.6	0.8528
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10042540 [exp]	12.2	0.7860
AT1G17210		ATILP1	ARABIDOPSIS IAP-LIKE PROTEIN, ...		Lus10038518 [exp]	12.6	0.8518

Compare expression of checked genes

Lus10007449 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.