Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32940 754 / 0 GAMMAVPE, GAMMA-VPE gamma vacuolar processing enzyme (.1) AT2G25940 731 / 0 ALPHAVPE, ALPHA-VPE alpha-vacuolar processing enzyme (.1) AT1G62710 559 / 0 BETAVPE, BETA-VPE beta vacuolar processing enzyme (.1) AT3G20210 480 / 7e-166 DELTAVPE, DELTA-VPE delta vacuolar processing enzyme (.1.2) AT1G08750 104 / 4e-24 Peptidase C13 family (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024446 [exp] 925 / 0 AT4G32940 717 / 0.0 gamma vacuolar processing enzyme (.1) Lus10024599 [exp] 566 / 0 AT1G62710 709 / 0.0 beta vacuolar processing enzyme (.1) Lus10032236 [exp] 563 / 0 AT1G62710 712 / 0.0 beta vacuolar processing enzyme (.1) Lus10033344 [exp] 508 / 2e-176 AT2G25940 473 / 3e-164 alpha-vacuolar processing enzyme (.1) Lus10034798 [exp] 292 / 1e-94 AT2G25940 260 / 9e-84 alpha-vacuolar processing enzyme (.1) Lus10034797 [exp] 106 / 1e-27 AT3G20210 104 / 4e-28 delta vacuolar processing enzyme (.1.2) Lus10006570 [exp] 109 / 1e-25 AT1G08750 578 / 0.0 Peptidase C13 family (.1.2.3) Lus10005520 [exp] 106 / 2e-24 AT1G08750 582 / 0.0 Peptidase C13 family (.1.2.3) Lus10006571 [exp] 67 / 1e-11 AT1G08750 460 / 1e-163 Peptidase C13 family (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G059400 [exp] 819 / 0 AT4G32940 752 / 0.0 gamma vacuolar processing enzyme (.1) Potri.006G232900 [exp] 815 / 0 AT4G32940 742 / 0.0 gamma vacuolar processing enzyme (.1) Potri.003G113300 [exp] 593 / 0 AT1G62710 704 / 0.0 beta vacuolar processing enzyme (.1) Potri.001G119800 [exp] 581 / 0 AT1G62710 720 / 0.0 beta vacuolar processing enzyme (.1) Potri.008G003400 [exp] 564 / 0 AT2G25940 534 / 0.0 alpha-vacuolar processing enzyme (.1) Potri.019G014000 [exp] 107 / 1e-24 AT1G08750 608 / 0.0 Peptidase C13 family (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0093 [flax] [poplar] Peptidase_CD PF01650 [flax] [poplar] Peptidase_C13 Peptidase C13 family
Representative CDS sequence Show only first row Show all	>Lus10007450 pacid=23178398 polypeptide=Lus10007450 locus=Lus10007450.g ID=Lus10007450.BGIv1.0 annot-version=v1.0 ATGGCGGCGATGGGAATGGCAGGGAATATGCCTGATGGTGTGTCGTCGTCTCCTTCCTCCTTAGATAAGGATGAGATTTTCAAAACAGTACTGACTGGTT CACTAGTTGAACCATATATTGGTCAACAGGCCAGTCCGATACAACCAGATAGTACACGGCAGCTGAAAGCAATCAACCACTTCCCGGTTTCCATTTATCC AAAGTATTATTGGCAGGAAAACCATCGCTCACTCCATCCATCATCCACCACCTCACCGGAGGAGGACATGTCGATTTTACCCGCCGGCCTCTCCCTTTTA CTCCTAGCTCTCTTCACCACCGTCTACTCTGCTCGTCCTGATAACGACGTCATACGCTTGCCGTCTTCTGCAGCTTCCAGGTTTTTCCGCTCGGGTGGAG TTGACGATGCCGACTCTACGGGTACAAGGTGGGCGGTCTTGATCGCCGGATCCAATGGATACTGGAATTACAGACACCAGGCTGATGTATGCCACGCATA TCAGCTTTTGAGGAAAGGGGGTCTGAAAGACGAGAATATAATTGTTTTCATGTATGATGATATTGCTGATAACGAAGAGAACCCAAGGCCTGGTGTTATA ATCAACAGTCCACACGGTGAAGATGTTTACAAAGGAGTTCCAAAGGATTATACAGGGGAGAATGTCACAGTGGGCAACTTTTTTGCTGCAATCCTTGGTA ACAAGACTGCACTTACTGGGGGCAGTGGAAAAGTGGTGGATAGTGGTCCTAATGATCATATTTTCATATACTACACCGATCATGGAGGTCCAGGAGTTCT AGGAATGCCTACCAGTCCTTACATTTATGCCAATGATCTGATAGATATCTTAAAAAAGAAGCATGCTTCTGGAACTTACCAAAGCTTGGTGTTCTATCTG GAAGCTTGTGAATCAGGAAGTATCTTTGAAGGTCTTCTTCCTGAGGGTTTAAATATTTATGCAACCACTGCTTCAAATGCTGAAGAGAGCAGCTGGGGAA CCTACTGTCCTGGAGATTATCCCAGTCCACCCCCGGAGTATGAAACCTGTTTAGGTGACCTGTACAGTGTTGCTTGGATGGAGGACTGTGATATACACAA TCTGCAAAGGGAAAGCCTGCACCAGCAATATCAGTTAGTTAAGAGCAGGACTTCAAATGACAATTCTCCGTATGGTTCTCATGTCATGCAATATGGTGAC TTGGAACTTAGCAAGGACATGCTTGATATGTATATGGGTACGAATCCAGCAAATGATAACTTCAGTTTTGTGGACATGAATGCCATAACACCACCTGCCA AAGCTGTCAACCAACGTGATGCTGATCTTGTCCATTTCTGGGATAAGTACTGTAAGGCCCCTGAAGGCTCCGCAAGGAAGGCAGAAGCTGAGAAGCAGGT TATGGAGGCAATGTCACACAGAATGCATATAGACAACAGCATGAAACTGATTGCAAAACTCCTATTTGGAATCCACAAGGGATCAGAGGTGCTCAAAACT GTTCGCCCTGCTGGACAACCCCTTGTTGACGATTGGAACTGCCTTAAAACACTGGTGCGGACTTTTGAGACACACTGTGGGTCGCTGTCCCAGTACGGAA TGAAGCACATGAGATCCATAGCAAATCTGTGCAATGCTGGAATTGACAACCACCAAATGAGAGAGGCATCAAGCCAAGCTTGCGTGAGCGTTCCGACCAG CCATTGGAGCTCCCTTCAAAGAGGGTTCAGTGCATAA
AA sequence Show only first row Show all	>Lus10007450 pacid=23178398 polypeptide=Lus10007450 locus=Lus10007450.g ID=Lus10007450.BGIv1.0 annot-version=v1.0 MAAMGMAGNMPDGVSSSPSSLDKDEIFKTVLTGSLVEPYIGQQASPIQPDSTRQLKAINHFPVSIYPKYYWQENHRSLHPSSTTSPEEDMSILPAGLSLL LLALFTTVYSARPDNDVIRLPSSAASRFFRSGGVDDADSTGTRWAVLIAGSNGYWNYRHQADVCHAYQLLRKGGLKDENIIVFMYDDIADNEENPRPGVI INSPHGEDVYKGVPKDYTGENVTVGNFFAAILGNKTALTGGSGKVVDSGPNDHIFIYYTDHGGPGVLGMPTSPYIYANDLIDILKKKHASGTYQSLVFYL EACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGDYPSPPPEYETCLGDLYSVAWMEDCDIHNLQRESLHQQYQLVKSRTSNDNSPYGSHVMQYGD LELSKDMLDMYMGTNPANDNFSFVDMNAITPPAKAVNQRDADLVHFWDKYCKAPEGSARKAEAEKQVMEAMSHRMHIDNSMKLIAKLLFGIHKGSEVLKT VRPAGQPLVDDWNCLKTLVRTFETHCGSLSQYGMKHMRSIANLCNAGIDNHQMREASSQACVSVPTSHWSSLQRGFSA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32940		GAMMAVPE, GAMMA...	gamma vacuolar processing enzy...		Lus10007450 [exp]	0	1
AT3G51880		AtHMGB1, NFD1, ...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10035511 [exp]	4.1	0.9247
AT4G25000		AMY1, AMY3, ATA...	alpha-amylase-like (.1)		Lus10021728 [exp]	11.8	0.8895
AT4G35090		CAT2	catalase 2 (.1.2)		Lus10030745 [exp]	13.5	0.8770
AT3G51880		AtHMGB1, NFD1, ...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10027787 [exp]	18.2	0.9030
AT3G51730			saposin B domain-containing pr...		Lus10025248 [exp]	22.8	0.9144
AT2G01350		QPT	quinolinate phoshoribosyltrans...		Lus10018780 [exp]	22.9	0.9136
AT3G26100			Regulator of chromosome conden...		Lus10006242 [exp]	23.9	0.9134
AT3G43230			RING/FYVE/PHD-type zinc finger...		Lus10039922 [exp]	26.9	0.8966
AT5G01950			Leucine-rich repeat protein ki...		Lus10003244 [exp]	27.4	0.9065
AT5G01950			Leucine-rich repeat protein ki...		Lus10035605 [exp]	27.4	0.9032

Compare expression of checked genes

Lus10007450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.