Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20430 174 / 2e-53 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024443 [exp] 404 / 5e-144 AT3G20430 198 / 6e-63 unknown protein Lus10000887 [exp] 280 / 2e-95 AT3G20430 113 / 2e-30 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G232800 [exp] 192 / 2e-60 AT3G20430 193 / 5e-61 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10258 [flax] [poplar] RNA_GG_bind PHAX RNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10007452 pacid=23178396 polypeptide=Lus10007452 locus=Lus10007452.g ID=Lus10007452.BGIv1.0 annot-version=v1.0 ATGGAAGACGAGGCCAATATCCTCGACTCCATACTAGACGATGAAGGCGAAGACGTCGAGATGGTCGACGTTGAAGAAGGCGAGTTGCTCGAACAAACTG ATGCTAGCCAGACCTGCGGTGCGACTGGCAATGGCGGAGACGGAGATTCTAAAACAACTGACAATCATCCAACTATGAAGAAGAAAAGGAGGAATAGGAA GAGGAAGAAGCCGGCAGGTGGTTCGCGCCCGCCCGTAAGCATTGACAGATTTGTGTTGGATACGTGTAGGCGTCTGAAAGAGAAGAAATCATATTTGGTA TACACTGCTGTGGGGATTCTTGGGCTTGAAGTGTTGAGCGATCTAGTTAGAGAGGTGGGTGCTATTCAGTCATGTGGAGGACAGATGACTTCAGATGGAA AACATTCTCGAACCGGTGGTGGAATATTATGGAACATCTTAAAGACGAGAGAACCTGCAGCATACAAAGAAATAATGAAGAAAGCAACTGAGTTTGAGAA ACAATTCAAGCAACAAAAGCCAACGAGACCAGCTGCTGCCAAGAATATAGTAGGTGGTGTGTCCAATGAAACTGCACAGGCCGGCACTAATGCTGCTCCG AATGATCCGTCTAATGGAACTGCACATGCAATCACCTACAAGACTCCAAATGACAGTGGACCTGTGGCCGCAAGCCAGCTTGAGAAGGACAATAGTGAAA TGAAGCACAGGTCTGTTCATGATAGGATTAGAGTGCCTGTTTCATACGAGGATCTGATTCAGGATGATGATGATCCAAACGACAGTTGCACATTGAATTC CAATGAGTGGTAG
AA sequence Show only first row Show all	>Lus10007452 pacid=23178396 polypeptide=Lus10007452 locus=Lus10007452.g ID=Lus10007452.BGIv1.0 annot-version=v1.0 MEDEANILDSILDDEGEDVEMVDVEEGELLEQTDASQTCGATGNGGDGDSKTTDNHPTMKKKRRNRKRKKPAGGSRPPVSIDRFVLDTCRRLKEKKSYLV YTAVGILGLEVLSDLVREVGAIQSCGGQMTSDGKHSRTGGGILWNILKTREPAAYKEIMKKATEFEKQFKQQKPTRPAAAKNIVGGVSNETAQAGTNAAP NDPSNGTAHAITYKTPNDSGPVAASQLEKDNSEMKHRSVHDRIRVPVSYEDLIQDDDDPNDSCTLNSNEW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20430			unknown protein		Lus10007452 [exp]	0	1
AT1G60800		NIK3	NSP-interacting kinase 3 (.1)		Lus10030898 [exp]	2.0	0.7062
AT3G62860			alpha/beta-Hydrolases superfam...		Lus10030366 [exp]	5.5	0.7178
AT2G37680		PAT3, FRY1, FHY...	unknown protein		Lus10023781 [exp]	14.6	0.7432
AT3G13225			WW domain-containing protein (...		Lus10010579 [exp]	21.2	0.6701
AT1G63250			DEA(D/H)-box RNA helicase fami...		Lus10019121 [exp]	63.7	0.5883
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Lus10038454 [exp]	68.5	0.5992
AT5G55310		TOP1alpha, TOP1...	DNA topoisomerase 1 beta (.1)		Lus10032571 [exp]	91.7	0.6503
AT3G04710		TPR10	tetratricopeptide repeat 10, a...		Lus10006559 [exp]	109.6	0.6266
AT3G54630			unknown protein		Lus10030584 [exp]	131.4	0.5953
AT1G24440			RING/U-box superfamily protein...		Lus10006448 [exp]	141.5	0.6164

Compare expression of checked genes

Lus10007452 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.