Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47010 650 / 0 unknown protein AT1G17030 564 / 0 unknown protein AT4G09965 93 / 1e-21 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009978 [exp] 650 / 0 AT2G47010 647 / 0.0 unknown protein Lus10000888 [exp] 424 / 2e-145 AT2G47010 320 / 7e-105 unknown protein Lus10024442 [exp] 264 / 1e-85 AT1G17030 231 / 4e-73 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G187700 [exp] 712 / 0 AT2G47010 690 / 0.0 unknown protein Potri.019G076900 [exp] 580 / 0 AT2G47010 587 / 0.0 unknown protein Potri.004G062000 [exp] 579 / 0 AT1G17030 648 / 0.0 unknown protein Potri.001G381600 [exp] 569 / 0 AT1G17030 698 / 0.0 unknown protein Potri.001G381400 [exp] 568 / 0 AT1G17030 706 / 0.0 unknown protein Potri.001G382000 [exp] 313 / 9e-104 AT1G17030 389 / 1e-133 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007453 pacid=23178406 polypeptide=Lus10007453 locus=Lus10007453.g ID=Lus10007453.BGIv1.0 annot-version=v1.0 ATGGGAACCCATAACCTGCTTTCTATCTCTGTATTGCTCTTTTCGCTCTTATTGTTGGCCGGCGCCGGAGTGGGGAAAGTTGACTATGACGAATCATCAG CGGTGGGAGATCCTGGAATGAGAAGAGATGGGCTCAGAGTTGCCTTTGAAGCTTGGAACTTCTGCAATGAAGTTGGCCACCAAGAAGCTCCTGGAATGGG CAGTCCCAGAGCTGCTGATTGCTTCGATTTCACCAATAATGCAGCACTAGTGGACCATAAGGTCACAGAAGCTGATAACAAGCTTGGAATTGGAGACCAA TTTCCAGGGCTGCCTCCACAAGCACTCCAGAATCCAGACCTGTACGCAGTCCACAAAGAGCTCTACCTTGGATCCCTCTGTCAGGTTAACTCATCATCGT CACCACCATGGCAGTTTTGGATGATCATGCTCAAAAATGGAAACTATGACACCAATTCTGGAGCATGCCCTGAGAATGGCAAAAAGGTGCCTCCTTTTAA ACCAACAGGAAGGTTTCCTTGCTTTGGAGATGGGTGTATGAATCACCCAACTCTTGAGCATCGACCCACCCGGCTTTTCAAGGACGGGTGGCTGAGAGGG GGATTCAATGGCACGTATGATTTGAGTGGTGGTGGTGGAGATGGGTCAATGTACGAGGTTGTGTGGGAGAAAAATGCTGGTGGTGGTGGTGGTAGTTGGG CGTTTCACCATAAGCTCAAGACTTCGAAGAAGTATCCATGGTTGATGCTTTACCTAAGAGCTGATGCAACCAGAGGTTTCTCTGGTGGCTATCATTATGA CACCAGAGGTATCCTCAAAACTCTGCCAGAGTCACCAAACTTCAAGGTGAGGTTGACACTAGACATCAAACAAGGAGGAGGACCAAAGAGCCAGTTCTAC TTGATTGATATCGGCAGCTGCTGGAAGAACGATGGATCTCCCTGCGACGGGGATGTACTCACCGACGTAACTCGTTACTCAGAGATGATAATAAACCCAG AAACACAGCCCTGGTGCACTCCTGCAAACCCTTCCCAGTGTCCACCTTTCCACATTACTCCAAACAACACCAAACTGTACAGAAACGACACTGCAAACTT CCCCTATGCAGCATACCACCTCTATTGCGCTCCGGGGAACGCCAAGTACCTCAAGCAGCCGGTCAACATTTGTGATCCTTACAGCAACCCTCAGGCTCAG GAGCTGCTTCAGTTGCTGCCTCATCCCATTTGGGGAGATTATGGCTACCCGACGAAACCAGGGCAAGGTTGGACTGGTGACTCCAAGAAGAGCTGGAAGC TTGATGTTGGTGCCTTGTCGAGCCGCCTCTACTTTTACCAGGATCCAGGGAGTCCACCTGCAAGAAGAATTTGGACGTCGATTGATGTAGGGACTGAAAT CTATGTGAGTGATCAAGAAGAGGTTGCAGACTGGACTCTCAGCGACTTCGATGTCATTCTCACGTACGTTGTTTGA
AA sequence Show only first row Show all	>Lus10007453 pacid=23178406 polypeptide=Lus10007453 locus=Lus10007453.g ID=Lus10007453.BGIv1.0 annot-version=v1.0 MGTHNLLSISVLLFSLLLLAGAGVGKVDYDESSAVGDPGMRRDGLRVAFEAWNFCNEVGHQEAPGMGSPRAADCFDFTNNAALVDHKVTEADNKLGIGDQ FPGLPPQALQNPDLYAVHKELYLGSLCQVNSSSSPPWQFWMIMLKNGNYDTNSGACPENGKKVPPFKPTGRFPCFGDGCMNHPTLEHRPTRLFKDGWLRG GFNGTYDLSGGGGDGSMYEVVWEKNAGGGGGSWAFHHKLKTSKKYPWLMLYLRADATRGFSGGYHYDTRGILKTLPESPNFKVRLTLDIKQGGGPKSQFY LIDIGSCWKNDGSPCDGDVLTDVTRYSEMIINPETQPWCTPANPSQCPPFHITPNNTKLYRNDTANFPYAAYHLYCAPGNAKYLKQPVNICDPYSNPQAQ ELLQLLPHPIWGDYGYPTKPGQGWTGDSKKSWKLDVGALSSRLYFYQDPGSPPARRIWTSIDVGTEIYVSDQEEVADWTLSDFDVILTYVV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47010			unknown protein		Lus10007453 [exp]	0	1
AT2G47180		ATGOLS1	galactinol synthase 1 (.1)		Lus10029145 [exp]	1.0	0.9824
AT5G07220		ATBAG3	BCL-2-associated athanogene 3 ...		Lus10023279 [exp]	3.5	0.9811
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Lus10018005 [exp]	4.9	0.9755
AT1G12260	NAC	ANAC007, VND4, ...	VASCULAR RELATED NAC-DOMAIN PR...		Lus10031721 [exp]	5.5	0.9798
AT2G28110		IRX7, FRA8	IRREGULAR XYLEM 7, FRAGILE FIB...		Lus10037376 [exp]	8.1	0.9687
AT4G12350	MYB	ATMYB42	myb domain protein 42 (.1)		Lus10032226 [exp]	9.5	0.9712
AT3G62020		GLP10	germin-like protein 10 (.1.2)		Lus10009254 [exp]	9.5	0.9721
AT1G58070			unknown protein		Lus10019953 [exp]	9.8	0.9712
AT1G24030			Protein kinase superfamily pro...		Lus10010703 [exp]	10.1	0.9615
AT3G16920		ATCTL2	chitinase-like protein 2 (.1)		Lus10037737 [exp]	10.8	0.9697

Compare expression of checked genes

Lus10007453 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.