Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25950 341 / 2e-120 Protein of unknown function (DUF1000) (.1) AT3G04780 61 / 2e-11 Protein of unknown function (DUF1000) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000888 [exp] 210 / 1e-65 AT2G47010 320 / 7e-105 unknown protein Lus10024442 [exp] 149 / 4e-44 AT1G17030 231 / 4e-73 unknown protein Lus10001780 [exp] 62 / 1e-11 AT3G04780 295 / 8e-104 Protein of unknown function (DUF1000) (.1) Lus10020246 [exp] 62 / 5e-11 AT3G04780 265 / 7e-90 Protein of unknown function (DUF1000) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G056100 [exp] 358 / 2e-127 AT2G25950 366 / 5e-131 Protein of unknown function (DUF1000) (.1) Potri.013G039500 [exp] 58 / 3e-10 AT3G04780 310 / 9e-110 Protein of unknown function (DUF1000) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF06201 [flax] [poplar] PITH PITH domain
Representative CDS sequence Show only first row Show all	>Lus10007454 pacid=23178410 polypeptide=Lus10007454 locus=Lus10007454.g ID=Lus10007454.BGIv1.0 annot-version=v1.0 ATGTCTTGTTTGCACGATCACAGCTGCGAAGATCACGATTGTTCTGCTGATTGGTCTCTCTACAAACATGTGGACCTCGCCAAGGTGACGATTCCCTTCT CCGATCAACGCCTTTCTCTCCGTCCTTTCTTCCTACTTCCAGTTGGCTACGCCAGTTTTGTTCCTTTTTGGCCTCCCCAAGTTTCCGCTCTAAATGAAGC AGTTCCTGGAAGTGCCAAGTCGGTCTTCAAAGCCTGGGAGCATCGCCTCAATCTCTCAGCGGGGGTCTTGGAAAGCAATGATGGAGATCCTGAACTGCTT GTCTACGTCCCGTTCACATCCGATGTCAAGATCAAGAGCATCTCAATTGTCGGTGGGGCCGATGGAACAAGTCCCTCCAAGATGAGGGTGTTTATCAATC GAGAAGGAATTGACTTCTCTGATGCTCAGGATATGCAAGCTATTCAGGAGTGGGAGTTGGCCGAAAATCTGCAAGGAGTACTCGAGTACCAAACAAGATA TGCCAAATTCCAGAGTGTTTCAAGCATCACGTTACACATCCCTGAGAACTTCGGAGGTGATACTACTCAGATACACTACATAGGTTTCAAAGGTGAAGCC ACTAAGAATAAGAGGGATGCTGTTGCAACGATTGTGTACGAACTCATGCCAAATCCTTCAGACCATAAGACAAAGGCTGAAACAGGTGGAGGTGTATCAC ACGTGGGATGA
AA sequence Show only first row Show all	>Lus10007454 pacid=23178410 polypeptide=Lus10007454 locus=Lus10007454.g ID=Lus10007454.BGIv1.0 annot-version=v1.0 MSCLHDHSCEDHDCSADWSLYKHVDLAKVTIPFSDQRLSLRPFFLLPVGYASFVPFWPPQVSALNEAVPGSAKSVFKAWEHRLNLSAGVLESNDGDPELL VYVPFTSDVKIKSISIVGGADGTSPSKMRVFINREGIDFSDAQDMQAIQEWELAENLQGVLEYQTRYAKFQSVSSITLHIPENFGGDTTQIHYIGFKGEA TKNKRDAVATIVYELMPNPSDHKTKAETGGGVSHVG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25950			Protein of unknown function (D...		Lus10007454 [exp]	0	1
AT5G20090			Uncharacterised protein family...		Lus10038250 [exp]	1.7	0.9519
AT5G39510		ZIG1, SGR4, ATV...	SHOOT GRAVITROPSIM 4, VESICLE ...		Lus10034696 [exp]	1.7	0.9624
AT5G11500			unknown protein		Lus10037899 [exp]	2.6	0.9459
AT4G31720		STG1, TAFII15, ...	TBP-ASSOCIATED FACTOR 10, SALT...		Lus10034375 [exp]	3.5	0.9466
AT1G62040		ATG8C	autophagy 8c, Ubiquitin-like s...		Lus10015563 [exp]	4.0	0.9565
AT1G49590			C2H2 and C2HC zinc fingers sup...		Lus10027913 [exp]	4.7	0.9400
AT4G14385			unknown protein		Lus10003559 [exp]	5.5	0.9354
AT5G58220		ALNS, TTL	allantoin synthase, transthyre...		Lus10035966 [exp]	5.7	0.9437
					Lus10034731 [exp]	6.3	0.9337
AT1G04555			unknown protein		Lus10014458 [exp]	6.7	0.9420

Compare expression of checked genes

Lus10007454 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.