Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38340 80 / 3e-15 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G45060 75 / 9e-14 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT3G44400 73 / 5e-13 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT3G04220 71 / 2e-12 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT3G44480 70 / 4e-12 COG1, RPP10, RPP1 recognition of peronospora parasitica 1, Disease resistance protein (TIR-NBS-LRR class) family (.1) AT3G51570 69 / 6e-12 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G12010 68 / 2e-11 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G16890 67 / 5e-11 BAL, SNC1 SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1, BALL, disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G69550 66 / 6e-11 disease resistance protein (TIR-NBS-LRR class) (.1) AT2G14080 66 / 7e-11 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005508 [exp] 219 / 8e-68 ND / Lus10029852 [exp] 237 / 5e-66 AT2G18750 252 / 1e-71 Calmodulin-binding protein (.1.2.3) Lus10000296 [exp] 213 / 4e-65 ND / Lus10012027 [exp] 219 / 1e-60 AT4G12020 102 / 2e-24 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3) Lus10012030 [exp] 206 / 9e-56 AT4G12020 141 / 6e-35 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3) Lus10016282 [exp] 182 / 8e-48 AT4G12020 142 / 3e-35 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3) Lus10020886 [exp] 115 / 3e-26 AT5G57710 226 / 2e-61 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10041060 [exp] 102 / 3e-22 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10012028 [exp] 92 / 8e-20 AT5G51630 45 / 7e-05 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G069500 [exp] 85 / 1e-16 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G147500 [exp] 76 / 2e-16 AT1G01490 91 / 4e-24 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.019G070479 [exp] 82 / 6e-16 AT5G17680 285 / 2e-80 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G147400 [exp] 75 / 8e-16 AT1G01490 74 / 2e-17 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.019G070651 [exp] 82 / 9e-16 AT5G17680 630 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069600 [exp] 82 / 1e-15 AT5G17680 647 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.004G073000 [exp] 72 / 8e-15 AT1G01490 96 / 5e-26 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.001G099500 [exp] 72 / 9e-15 AT1G01490 105 / 2e-29 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.019G070393 [exp] 78 / 1e-14 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070700 [exp] 78 / 1e-14 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF00403 [flax] [poplar] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Lus10007455 pacid=23178400 polypeptide=Lus10007455 locus=Lus10007455.g ID=Lus10007455.BGIv1.0 annot-version=v1.0 ATGAAGAAAGTGGTGTTCAAAGTGGATCTGCAAGACGTCAAATATAGGCGTAGAGCTATGAAGATAGTCACCGGAGTTTCAGGGGTCGACAGCGTCTCTC TGGACAGGGAAAACAACACGCTGACAGTGACCGGGGACTTTGATCTGGTGAAGATAGCAATTAAACTTAGGAAGCGGTGCGAGATACTCTCTGTGGGACC TGCAGAAGTGAAGCAAGATGAGAAGAATAAGGAAGAGGAAGACAAGGACAAGAATTTTAAGGCAGAGGTCACTGGGATCCGCATGTACCATGGTTCTGCT ATGCAAACCGAGGAACACCCGTATTTTATCAATGATCCAGAACAGAAGCAAGATAAGAGGGAAGGTGATATTACTGCCGTGGCTTCCTATAACTATAACT ATAATAAAGAAACGGAGAACACTAAGGCCGATAGCTCTTGGAAAAATATTTGGAACCTAAAATACTCCATCCCAAACACTTGCCGATATGTTTTCGGAAA ATCTAAAAAACCTGGACTCTCACTTGTATTGGGGAGCTCATCAAGTGATGGTGAAGTCCATCCAATATTGCAGTCGCCTCATGGACACTATGAACAACTA GCTTCCCCTATTCTGCTTCCTCCTGAACTACTGCCTTCACTGGATGGACAAGACGAATGGACCCCAGAAACCAAAGCCGATTGTTGCAAGATTCCGGCAC CATCACCCAACCTTGATACGGATCAGAAAAGGGACACTTTTACTGCTAGCCTTCTTCATCATGAGGCTGATCAGACAAGTTCTGCAGCTTCTACTAAATT ATACCAAGCTGCAAAGGAAACAATGACACAACCATGGAAGATGCAGGTTTCGTTGGCGATGATGATCAACCCTTATCACTGCAACTACTCCGTGTATACA CAACAGCTATACGTTGCAAAGTCTCCTTCATTCCAAATTCCTGCACACAACTTTGTGTCCCTTTTCCTCCCATACTGCAAACTTAACCAGCTTTGGAAAG GAGACCAGCAGCTGCCTTTAGTAAACCTGAAGAGTATTGATCTAGCACATTCCAGTCTACTCTGGATTCCTGACCTGTCCAAGGCTCAGAAACTTGAAAG TTTAAATCTTCAAGGCTGTGAAAACTTGGTTGGGGTTTCAACCATTCAGTATCTTACAAACCTTCAACATCTCAACCTCAAACGCTGCAGAAATCTCAAG GGATTACCAACTTTGATCAGATTGAAGCTGCTAAAGACTCTTGATCTCTCTTTCTGCTCAAACATTACCAGCCTTCCTCCCTCGCTTGGATGTCTCACAA ATCTCTCTGAACTTAATCTCAGAAACTGCGTGAAACTTGAGCACCTCCCACTCAGTGTTATCCACTTGATGGCATCTCTTGAAACTCTGAATGTTTCTGA CTGCTCCCGCTTGTGGGAATCCCTTATTAGTACTAGAGAAGAGGATGGAGCAGCTACCATATCAACACAGCAGCAGGACAGATTAACTACTGCTACTGGA GAAACTTGTCCTCTATCAGAAATAGATGGGGATCAGGATGAAGAATCTTTCATGGCCACTCCATTGATAAATTTTCTACCTCCAGAACTCATATCTAGGC TGCTTCCTCCTTTTGACGTGAGTTCTTCTTCCAAAGACGACTATATTTTAGCCAAACGCAGCAATGAAGACACTCCAGATGAGAATGTGCAGCCAATGCA AGAAGCATTTGGAGAACAACGTGCAGGGGATGAAGGGAATTCGTTTGCTAATATGGAGAAAGACGTTATAGACATGATTGACCAACTTTCGAGTTTGAGT TGTGATGAAAATGAAATGCCAGAGAGTGTGGTTGCTTGGTTGGCAGAGCTGGAACAAAGCATGAAGGTGAAGGGTGCTCAAGCTGAGAACTTGAAGGAGG TGGATGCAAGGTTGGCAGCTGGAGGGTTGGAGCTGAGTTTTCTGGACGCAGAATTGTCAAGGATTTTGGTGGAGGAAGAGAAGACAGAGGCTGAGCTTCA ACGTTTGATGAACAAGAAGAGTGAGATGGTGCAGCATTAG
AA sequence Show only first row Show all	>Lus10007455 pacid=23178400 polypeptide=Lus10007455 locus=Lus10007455.g ID=Lus10007455.BGIv1.0 annot-version=v1.0 MKKVVFKVDLQDVKYRRRAMKIVTGVSGVDSVSLDRENNTLTVTGDFDLVKIAIKLRKRCEILSVGPAEVKQDEKNKEEEDKDKNFKAEVTGIRMYHGSA MQTEEHPYFINDPEQKQDKREGDITAVASYNYNYNKETENTKADSSWKNIWNLKYSIPNTCRYVFGKSKKPGLSLVLGSSSSDGEVHPILQSPHGHYEQL ASPILLPPELLPSLDGQDEWTPETKADCCKIPAPSPNLDTDQKRDTFTASLLHHEADQTSSAASTKLYQAAKETMTQPWKMQVSLAMMINPYHCNYSVYT QQLYVAKSPSFQIPAHNFVSLFLPYCKLNQLWKGDQQLPLVNLKSIDLAHSSLLWIPDLSKAQKLESLNLQGCENLVGVSTIQYLTNLQHLNLKRCRNLK GLPTLIRLKLLKTLDLSFCSNITSLPPSLGCLTNLSELNLRNCVKLEHLPLSVIHLMASLETLNVSDCSRLWESLISTREEDGAATISTQQQDRLTTATG ETCPLSEIDGDQDEESFMATPLINFLPPELISRLLPPFDVSSSSKDDYILAKRSNEDTPDENVQPMQEAFGEQRAGDEGNSFANMEKDVIDMIDQLSSLS CDENEMPESVVAWLAELEQSMKVKGAQAENLKEVDARLAAGGLELSFLDAELSRILVEEEKTEAELQRLMNKKSEMVQH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G44480		COG1, RPP10, RP...	recognition of peronospora par...		Lus10007455 [exp]	0	1
AT2G23770			protein kinase family protein ...		Lus10022488 [exp]	1.0	0.8886
AT4G34370		ATARI1	ARABIDOPSIS ARIADNE 1, ARIADNE...		Lus10040508 [exp]	1.4	0.8389
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Lus10003389 [exp]	1.7	0.8281
AT1G27170			transmembrane receptors;ATP bi...		Lus10007823 [exp]	3.5	0.8163
AT4G12010			Disease resistance protein (TI...		Lus10016029 [exp]	5.5	0.7945
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Lus10037087 [exp]	5.7	0.8031
AT4G17250			unknown protein		Lus10004355 [exp]	6.5	0.7669
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10035704 [exp]	6.7	0.7735
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Lus10037086 [exp]	7.3	0.8005
					Lus10009962 [exp]	8.1	0.7898

Compare expression of checked genes

Lus10007455 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.