Plant FIBer expression Database

Lus10007456 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G32960 355 / 7e-125 unknown protein
AT4G32970 300 / 4e-98 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G061800
[exp]
376 / 3e-133 AT4G32960 315 / 8e-109 unknown protein
PFAM info
Representative CDS sequence
>Lus10007456 pacid=23178414 polypeptide=Lus10007456 locus=Lus10007456.g ID=Lus10007456.BGIv1.0 annot-version=v1.0
ATGGAGAGAGTGGGTGGAGAGAGCAGGGGAGGCAGCCGATACACTCTGAAACCCAGCCGCTTATACAGCGAGGACATCCTTTTCTGCGTAGACGTCGACT
CCGAATCTACGGTGGAGATGAAAGCTACTGGCCCTAATGGCCGTCCTTTAACCAGATTGGAGGCCGTCAAGCAAGCAATTCTAGTCTTCATCAATATCAA
GCTCTCCATTAACCCTGATCATCGCTTCGCTTTCGCCACCCTTTCCAAATCCGCTTCTTGGCTGCGGAAAGAGTTCAGCAGTGAAGTCGATGCCTCTATC
GCTGCACTTAGGGGACTTTCAGCGACTGCATCTAGTAGTCAAGCGGATCTTACTCATTTATTCCGCCTAGCAGCTCACGAGGCAAAGAAATCTAGAGCAC
AAAACCGGTTGTTGAGGGTGGTTCTGGTGTACTGCAGATCATCAGTGCGGCCACAGCAGCAGTGGCCTATAAACCAGAAAGTGTTCACTCTAGATGTGAT
GTACCTGCACGACAAGCCAGGACCGGACAACTGCCCACAAGAGGTGTATGATGCACTGGTGGAAACGCTAGAGCATGTGAGCGAGCACGAGGGTTACATC
TTCGAGACGGGGCAAGGGTTAAGGGTTCTTCTCCGCTACATGTCGCAGCTGCTGTTGCATCCCCAGCAACGGTGCACGCAAGACGACCTCGACATCCCTA
AGTCTCTGGTCAAGAAGCCCGATGATCCTACACATGGGGAAGAGAATGTACTTCCTGTGTCTAGCCAGTGA
AA sequence
>Lus10007456 pacid=23178414 polypeptide=Lus10007456 locus=Lus10007456.g ID=Lus10007456.BGIv1.0 annot-version=v1.0
MERVGGESRGGSRYTLKPSRLYSEDILFCVDVDSESTVEMKATGPNGRPLTRLEAVKQAILVFINIKLSINPDHRFAFATLSKSASWLRKEFSSEVDASI
AALRGLSATASSSQADLTHLFRLAAHEAKKSRAQNRLLRVVLVYCRSSVRPQQQWPINQKVFTLDVMYLHDKPGPDNCPQEVYDALVETLEHVSEHEGYI
FETGQGLRVLLRYMSQLLLHPQQRCTQDDLDIPKSLVKKPDDPTHGEENVLPVSSQ

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G32960 unknown protein Lus10007456
[exp]
0 1
AT1G28490 OSM1, ATSYP61, ... syntaxin of plants 61 (.1.2) Lus10017686
[exp]
3.0 0.9344
AT1G03330 Small nuclear ribonucleoprotei... Lus10042686
[exp]
4.0 0.9116
AT1G02680 TAF13 TBP-associated factor 13 (.1) Lus10018927
[exp]
7.5 0.8977
AT5G59140 BTB/POZ domain-containing prot... Lus10040746
[exp]
7.9 0.8976
AT5G22080 Chaperone DnaJ-domain superfam... Lus10004099
[exp]
8.8 0.9003
AT2G26430 ATRCY1, RCY1 arginine-rich cyclin 1 (.1.2.3... Lus10041418
[exp]
8.9 0.9156
AT1G63800 UBC5 ubiquitin-conjugating enzyme 5... Lus10024638
[exp]
9.8 0.8768
AT3G28970 AAR3 antiauxin-resistant 3, Domain ... Lus10005235
[exp]
11.0 0.9032
AT1G10430 PP2A-2 protein phosphatase 2A-2 (.1) Lus10013287
[exp]
11.2 0.9143
AT3G11290 unknown protein Lus10002039
[exp]
11.5 0.8928

Lus10007456 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.