Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11730 491 / 2e-171 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G25970 467 / 6e-162 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT3G21310 464 / 5e-161 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G51770 455 / 4e-157 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT1G10280 374 / 5e-125 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G68390 355 / 4e-118 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G16170 333 / 3e-109 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G73810 324 / 9e-106 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G68380 322 / 5e-105 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G10880 310 / 2e-97 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005504 [exp] 716 / 0 AT5G11730 499 / 1e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10005505 [exp] 716 / 0 AT5G11730 499 / 1e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10009738 [exp] 474 / 1e-164 AT3G21310 511 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10003499 [exp] 471 / 2e-163 AT3G21310 503 / 3e-179 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10024468 [exp] 373 / 5e-125 AT1G10280 524 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10002989 [exp] 373 / 5e-125 AT1G10280 525 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10040972 [exp] 361 / 3e-120 AT1G10280 529 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10035828 [exp] 358 / 1e-118 AT1G68390 401 / 7e-138 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10013427 [exp] 357 / 2e-118 AT1G10280 528 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G233400 [exp] 541 / 0 AT5G11730 557 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.018G059100 [exp] 537 / 0 AT5G11730 548 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.001G195900 [exp] 500 / 5e-175 AT3G21310 504 / 8e-180 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.010G121900 [exp] 386 / 7e-130 AT5G11730 409 / 1e-141 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.015G045400 [exp] 374 / 2e-125 AT1G68390 390 / 2e-134 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.003G001700 [exp] 373 / 3e-125 AT1G10280 543 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G228100 [exp] 371 / 2e-124 AT1G10280 512 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.010G121800 [exp] 360 / 5e-120 AT1G68390 399 / 1e-137 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.015G045500 [exp] 357 / 2e-118 AT5G16170 394 / 2e-135 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G097700 [exp] 355 / 2e-118 AT5G16170 452 / 6e-159 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05907 [flax] [poplar] DUF866 Eukaryotic protein of unknown function (DUF866) CL0110 [flax] [poplar] GT-A PF02485 [flax] [poplar] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Lus10007457 pacid=23178390 polypeptide=Lus10007457 locus=Lus10007457.g ID=Lus10007457.BGIv1.0 annot-version=v1.0 ATGGTGAACTTTACGCTTATGATAACCGGCGATCTGGAGAACATCGCCGCCCTTCAGCCTCGCGGCGGCTGCGACGATCCTACTTTCTCCTATTTCTTCA AGTTGAAATGTGGAAGTTGTGGAGAGGTTACCCAGAAGGAAACCTGCGTTGTTTTGGAGGAAAAAGTTCAACTTTCTTCGAGCAAAGGCACCGCTAACCT TGTTCAGAAGTGCAAGTTGTGTGGGAGGGAAGGAAATATTTCCATGATCCCTGGGAAAGGGAAACCACTCATCCAGGAAAGCAGTGAAGCTGGGAAGTAT GTGCCACTGATGATGTTTGACTGCAGAGGTTATGAGCCTGAGGGGTTCTTATTTGGCAGTGGTTGGATAGCTGAATCAGAGGCGGGGACTAAATTTGAGG ATATCGACTTGTCTGGAGGGGACTTTATGGAGTATGATGAGAAGGGAGAGTGTGCAGTAATGATATCAAACCTCTCATCTAAATTTGAGCTTGATGGTGA GCAATTGCCGGTAGCAGCAGAGATCATCCATCATTCATCACATCCTCCTCTTCAACTCATCATCATACTTACCTTTATCCCTCCTCTTCCCAAACTCCCT CGCCGTCCTACATCTCCCCGTCACATTTCTTTTCTACTTAAATCTCCCCCCTTCTTCAGCTTACCTAGATCCACTAGTTACAGCCATATATACGCTATCA AGCGTTTCGGTGGTCGGAATGTCATCAACTCCGTAGGCTTCATCAATTCCCCTTCCTCAACCTGCATTGGTGCTGCTGCTGATTTTACCCTCCACCAATT TATCACCCCGCCTTCCAATTTGCTCCACAAGATGACCGATGAAGAGCTGTTTTGGAGGGCTACCCTTGTTCCTAGAATCCAACAATACCCTTTCAGGAGA CTCCCCAAAATTGCTTTCATGTTCCTTTCTAAGGGTCCTTTGCCCCTTGCCCCTCTTTGGGACAGATTCTTCAAGGGTCATCAAGGGCGTTACTCCATTT ACCTCCATTCACTCCCCACATTCCAAGCCAAGTTCCCACCTTCTTCTGCCTTCTACCGGAGGCAGATTCCTAGCAAGGTTTCTGAATGGGGCAAGATGAG TATGTGTGATGCTGAAAGAAGACTCCTCGCTAATGCATTGCTTGACATCTCCAACGAGTGGTTCATTCTTCTATCAGAATCCTGCATTCCTCTCTACAAT TTCAGCATCATATACCGCTACATAGCAAAGTCCAAATACAGTTTTGTCGGCGCGTTTGATGACGAAGGTCCATATGGGAGGGGACGCTACAATGAAAACA TGGCACCTGAGGTGAACATTACCCAATGGCGCAAAGGATCACAGTGGTTCGAGCTGAACCGAGAGCTTGCAGTCAAGATAGTGGAAGACACCAAGTATTA CCCGAAATTCGAAGAATTCTGCAAGCCTCACTGTTACGTGGATGAGCATTATTTCCCAACAATGCTGACAATTGAAGCAACACCGGCATTGGCAAATCGA AGCATCACCTGGGTGGACTGGTCTAGAGGTGGTGCTCACCCGGCAACTTTTGGAAGGGCCGACATAACAGAAGAGTTCTTCAAGAAGCTATACGAAAAGC AGAAATGCAAGTACAATGATAAGGCCTACAAGATATGCAGTCTTTTCGCCAGGAAATTCTCCCCAAGTGCGTTGGAACCATTGTTGCACATATCAAAGGA GGTGTTGGGATTTTGA
AA sequence Show only first row Show all	>Lus10007457 pacid=23178390 polypeptide=Lus10007457 locus=Lus10007457.g ID=Lus10007457.BGIv1.0 annot-version=v1.0 MVNFTLMITGDLENIAALQPRGGCDDPTFSYFFKLKCGSCGEVTQKETCVVLEEKVQLSSSKGTANLVQKCKLCGREGNISMIPGKGKPLIQESSEAGKY VPLMMFDCRGYEPEGFLFGSGWIAESEAGTKFEDIDLSGGDFMEYDEKGECAVMISNLSSKFELDGEQLPVAAEIIHHSSHPPLQLIIILTFIPPLPKLP RRPTSPRHISFLLKSPPFFSLPRSTSYSHIYAIKRFGGRNVINSVGFINSPSSTCIGAAADFTLHQFITPPSNLLHKMTDEELFWRATLVPRIQQYPFRR LPKIAFMFLSKGPLPLAPLWDRFFKGHQGRYSIYLHSLPTFQAKFPPSSAFYRRQIPSKVSEWGKMSMCDAERRLLANALLDISNEWFILLSESCIPLYN FSIIYRYIAKSKYSFVGAFDDEGPYGRGRYNENMAPEVNITQWRKGSQWFELNRELAVKIVEDTKYYPKFEEFCKPHCYVDEHYFPTMLTIEATPALANR SITWVDWSRGGAHPATFGRADITEEFFKKLYEKQKCKYNDKAYKICSLFARKFSPSALEPLLHISKEVLGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11730			Core-2/I-branching beta-1,6-N-...		Lus10007457 [exp]	0	1
AT3G52525	OFP	ATOFP6, OFP6	ARABIDOPSIS THALIANA OVATE FAM...		Lus10013318 [exp]	3.0	0.8584
AT5G40470			RNI-like superfamily protein (...		Lus10022269 [exp]	5.7	0.8535
AT5G10780			unknown protein		Lus10040473 [exp]	6.7	0.8500
AT3G52525	OFP	ATOFP6, OFP6	ARABIDOPSIS THALIANA OVATE FAM...		Lus10005206 [exp]	7.0	0.8426
AT1G22170			Phosphoglycerate mutase family...		Lus10033465 [exp]	8.5	0.8380
AT5G12840	CCAAT	NF-YA1, ATHAP2A...	"nuclear factor Y, subunit A1"...		Lus10016411 [exp]	9.8	0.8386
AT2G45210			SAUR-like auxin-responsive pro...		Lus10001985 [exp]	12.4	0.8246
AT1G01430		TBL25	TRICHOME BIREFRINGENCE-LIKE 25...		Lus10029454 [exp]	12.7	0.8438
AT1G09330		ECHIDNA, ECH	unknown protein		Lus10004514 [exp]	15.4	0.8319
AT3G63220			Galactose oxidase/kelch repeat...		Lus10042607 [exp]	16.5	0.8319

Compare expression of checked genes

Lus10007457 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.