Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25930 211 / 3e-57 PYK20, ELF3 EARLY FLOWERING 3, hydroxyproline-rich glycoprotein family protein (.1) AT3G21320 140 / 1e-34 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005501 [exp] 1203 / 0 AT2G25930 304 / 5e-93 EARLY FLOWERING 3, hydroxyproline-rich glycoprotein family protein (.1) Lus10006857 [exp] 124 / 9e-30 AT2G25930 110 / 8e-26 EARLY FLOWERING 3, hydroxyproline-rich glycoprotein family protein (.1) Lus10037599 [exp] 83 / 3e-16 AT2G25930 88 / 2e-18 EARLY FLOWERING 3, hydroxyproline-rich glycoprotein family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G233800 [exp] 443 / 2e-142 AT2G25930 363 / 1e-115 EARLY FLOWERING 3, hydroxyproline-rich glycoprotein family protein (.1) Potri.003G045000 [exp] 300 / 2e-90 AT3G21320 202 / 6e-58 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007459 pacid=23178392 polypeptide=Lus10007459 locus=Lus10007459.g ID=Lus10007459.BGIv1.0 annot-version=v1.0 ATGAAGAGAGGGAAAGATGATGAGAAGATGATGAGTCCGTTATTCCCGAGGCTCCATGTGAATGATACTGAGAAAGGAGGGCCGAGAGCACCTCCAAGGA ACAAGATGGCCCTTTATGAGCAGCTTAGCATTCCTTCCCAAAGGTTTAATCCTGCCGTCTTGCCTCGTACTCCCACTCAACTCAGCAACTTAGCTCCTCC TGGCTCCTCTTCAACCCAGGCGAGTGGCATTGAAAGCAAGCGTCCGTATCCTCCGCAGGTTACTCCTATTGCCGATCAATTCCCTCCTTACCAGGCTGCT GCTGCGACCAGGAACTTGAACACTTCTGTAGCCATGCATGAACAGAGGAAGAAGACAGGAGACGAAGATGATTTCACAGTTCCTATCTTTGTACATACAG GTGTGGCCCCGTTGCAGATAAAAGTTTCAAGTACCATTAGTGGGGAAGAACTAGCTACATTTAGCTATAAACATTCAGGTCATTCCAACAAAGCCCAGAA TGCTGGCAATAACACACCGCAGTGTGATTCTTCAATTGATCGTCATTTGAGACTTGGAGGAAGTGCAAAAGCCTGCATTTCAAGTGGGGATAATTTAGTG AAATCTTCTATGAAGTTGCAGCGAGACGGAGAAAACTTCGCTGATTCTAGAGAAGAAGCTATTGCACAAACAAAGAAGGGATTTCAAAGTAATTATTTGA CTGATGTGAGCAGCTTGCATGGAGACAAGTCTTGTTCGCAACAGCAGGCGTGCTTGCAGTCAAATGACTGTGTACTTGGTGATGCTGTTCCTGAGCTGCA GGGGGTCACTGAGCAAAGTGATATTCTTGTACGAACGGATAACTTGTGTCCAAGTGAACAGCCCTGTAGACGCAATGAGGACGGTGTCACTTATGTTGCC AGGGTGGATGTGTCGTTAGGAGTGGGAAATGCTGATAGAAGTGATGATGTGTCTGAGACATCTATTATTGACTCTGCCGAACCTATGGATATGTCTCCTG ATGATGTTGTAGATATAATTGGTCAGAAACATTTCTGGAAAGCTAGAAGAGCAATTGTCAAGTCTCAAGTGTTCAGCCAAGTCATTGTTTTTATGTTTCA GAGTTTGCTACTAATGTCAGAGGTTGTTGAGAAAATAACTGTTGATATTTCTAGGGTGCATCTGCTGTCAAACATGCGTCTCTATGGTAACTTTGCGAGT GGCATTGAAAGCAAGCGTCCGTATCCTCCGCAGGTTACTCCTATTGCCGATCAATTCCCTCCTTACCAGGCTGCTGCTGCGACCAGGAACTTGAACACTT CTGTAGCCATGCATGAACAGAGGAAGAAGACAGGAGACGAAGATGATTTCACAGTTCCTATCTTTGTACATACAGGTGTGGCCCCGTTGCAGATAAAAGT TTCAAGTACCATTAGTGGGGAAGAACTAGCTACATTTAGCTATAAACATTCAGGTCATTCCAACAAAGCCCAGAATGCTGGCAATAACACACCGCAGTGT GATTCTTCAATTGATCGTCATTTGAGACTTGGAGGAAGTGCAAAAGCCTGCATTTCAAGTGGGGATAATTTAGTGAAATCTTCTATGAAGTTGCAGCGAG ACGGAGAAAACTTCGCTGATTCTAGAGAAGAAGCTATTGCACAAACAAAGAAGGGATTTCAAAGTAATTATTTGACTGATGTGAGCAGCTTGCATGGAGA CAAGTCTTGTTCGCAACAGCAGGCGTGCTTGCAGTCAAATGACTGTGTACTTGGTGATGCTGTTCCTGAGCTGCAGGGGGTCACTGAGCAAAGTGATATT CTTGTACGAACGGATAACTTGTGTCCAAGTGAACAGCCCTGTAGACGCAATGAGGACGGTGTCACTTATGTTGCCAGGGTGGATGTGTCGTTAGGAGTGG GAAATGCTGATAGAAGTGATGATGTGTCTGAGACATCTATTATTGACTCTGCCGAACCTATGGATATGTCTCCTGATGATGTTGTAGATATAATTGGTCA GAAACATTTCTGGAAAGCTAGAAGAGCAATTGTCAACCAACAAAGAGTATTCGCTGTTCAAGTGTTTGAGTTGCATAGACTGATCAAGGTTCAACAACTG ATTGCTGGTTCTCCGCAGCTTCTTGTAGAAGAGAATACCTATCTCAGAAAACCTTCTATGCCTGGTTCTCCAATGAAAAAACTTCAATCTGAATTTGTTC TGGTGCAGGCAGCACGGACTAGAAAAAGAAAAGATAGTTCAGAGGAACCTAGTAATAAGTTGGAAGGTTCTGCAGAGAATGCAGTTGGAAAGCCATCCTT ACCTCCTCTTAGAAGTGGTAGCCAGCCATCAGATCATACACCTCATGTAGGAAACCAAGCACCAGTAGCAGGGATTAATGACAGCAAAACAAGTGCATGG TGCTTTCACCAACCTACTGGGCAGCAGTGGTTGGTGCCTGTGATGTCACCAACAGAAGGACTCGTATATAAACCTTATGCACCCCCGGGATCAGTGGCAA CAGGTTGTGGAGGATGTGGATCATATTGCCCTACGCCCATGATGGGCAACTTTATGAACCCAGGTTACGGCGTCCCACCTTACTTCCATCAGGGAACTGG TGGCCTACCGGGCCCTCCTCCAGTTGGTCATGGTTGTTACCCTCCTTATGGCATGCCGGTCATGAGCCCAGGTATCTCGGGCTCAGCAGTGGAACAACTG AACCGGGTTCCAGTGTCAGGTTCCCATGGTCAAAATAGTCGGTTATCTGGAAGTGGGGCAAATTTTAGTGTGCAACATCAGAGCTCAACTAATGTGGAAT TGCGAACCCAGAAGAGTGGGGTTATTTCAATGGCTGAGATTCGGGTATCAACTAAAGAGAGAGAGGTACAAGGAAGTACAGCAAGTAGCCGCAGCGAGAG AATGGAAGTAGTTGGGAGTGTTCAACAGGTTGATGGAAGAGATGCACTTTATATGTTCCCAGCAGCACCTACTGCGGTTCAAGATTCTCGTGATGCAGGG CAAGCATCTAGAGTGATCAGGGTAGTGCCTCATAATCCTAGGTCAGCTACTGAGTCTGCTGCTCGGATCTTTCAGTCGATACAAGAGGAAAGGAAGCAGC AGGAGTCTATTTAA
AA sequence Show only first row Show all	>Lus10007459 pacid=23178392 polypeptide=Lus10007459 locus=Lus10007459.g ID=Lus10007459.BGIv1.0 annot-version=v1.0 MKRGKDDEKMMSPLFPRLHVNDTEKGGPRAPPRNKMALYEQLSIPSQRFNPAVLPRTPTQLSNLAPPGSSSTQASGIESKRPYPPQVTPIADQFPPYQAA AATRNLNTSVAMHEQRKKTGDEDDFTVPIFVHTGVAPLQIKVSSTISGEELATFSYKHSGHSNKAQNAGNNTPQCDSSIDRHLRLGGSAKACISSGDNLV KSSMKLQRDGENFADSREEAIAQTKKGFQSNYLTDVSSLHGDKSCSQQQACLQSNDCVLGDAVPELQGVTEQSDILVRTDNLCPSEQPCRRNEDGVTYVA RVDVSLGVGNADRSDDVSETSIIDSAEPMDMSPDDVVDIIGQKHFWKARRAIVKSQVFSQVIVFMFQSLLLMSEVVEKITVDISRVHLLSNMRLYGNFAS GIESKRPYPPQVTPIADQFPPYQAAAATRNLNTSVAMHEQRKKTGDEDDFTVPIFVHTGVAPLQIKVSSTISGEELATFSYKHSGHSNKAQNAGNNTPQC DSSIDRHLRLGGSAKACISSGDNLVKSSMKLQRDGENFADSREEAIAQTKKGFQSNYLTDVSSLHGDKSCSQQQACLQSNDCVLGDAVPELQGVTEQSDI LVRTDNLCPSEQPCRRNEDGVTYVARVDVSLGVGNADRSDDVSETSIIDSAEPMDMSPDDVVDIIGQKHFWKARRAIVNQQRVFAVQVFELHRLIKVQQL IAGSPQLLVEENTYLRKPSMPGSPMKKLQSEFVLVQAARTRKRKDSSEEPSNKLEGSAENAVGKPSLPPLRSGSQPSDHTPHVGNQAPVAGINDSKTSAW CFHQPTGQQWLVPVMSPTEGLVYKPYAPPGSVATGCGGCGSYCPTPMMGNFMNPGYGVPPYFHQGTGGLPGPPPVGHGCYPPYGMPVMSPGISGSAVEQL NRVPVSGSHGQNSRLSGSGANFSVQHQSSTNVELRTQKSGVISMAEIRVSTKEREVQGSTASSRSERMEVVGSVQQVDGRDALYMFPAAPTAVQDSRDAG QASRVIRVVPHNPRSATESAARIFQSIQEERKQQESI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25930		PYK20, ELF3	EARLY FLOWERING 3, hydroxyprol...		Lus10007459 [exp]	0	1
AT1G68190	CO		B-box zinc finger family prote...		Lus10035257 [exp]	1.7	0.7734
AT1G77260			S-adenosyl-L-methionine-depend...		Lus10042762 [exp]	6.3	0.7365
AT1G68190	CO		B-box zinc finger family prote...		Lus10034625 [exp]	7.1	0.7471
AT1G10120	bHLH	bHLH074, CIB4	basic helix-loop-helix (bHLH) ...		Lus10006491 [exp]	9.6	0.7517
AT2G48060			unknown protein		Lus10029973 [exp]	14.1	0.7403
AT5G36930			Disease resistance protein (TI...		Lus10007836 [exp]	16.6	0.7610
					Lus10033157 [exp]	16.9	0.7267
AT2G40090		ATATH9	ABC2 homolog 9 (.1)		Lus10028292 [exp]	18.7	0.7562
AT3G22530			unknown protein		Lus10000009 [exp]	21.4	0.7102
AT1G69170	SBP	SPL6	Squamosa promoter-binding prot...		Lus10000643 [exp]	29.2	0.7239

Compare expression of checked genes

Lus10007459 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.