Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11710 443 / 7e-150 ENTH/VHS family protein (.1) AT2G43160 229 / 1e-66 ENTH/VHS family protein (.1.2.3.4) AT3G59290 219 / 3e-61 ENTH/VHS family protein (.1) AT3G23350 78 / 1e-15 ENTH/VHS family protein (.1) AT3G46540 71 / 4e-13 ENTH/VHS family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005498 [exp] 852 / 0 AT5G11710 489 / 4e-166 ENTH/VHS family protein (.1) Lus10025527 [exp] 247 / 2e-71 AT2G43160 716 / 0.0 ENTH/VHS family protein (.1.2.3.4) Lus10026741 [exp] 244 / 1e-70 AT2G43160 705 / 0.0 ENTH/VHS family protein (.1.2.3.4) Lus10021173 [exp] 79 / 2e-15 AT3G23350 196 / 3e-60 ENTH/VHS family protein (.1) Lus10011810 [exp] 79 / 2e-15 AT3G23350 196 / 3e-60 ENTH/VHS family protein (.1) Lus10040824 [exp] 71 / 3e-13 AT3G46540 277 / 1e-92 ENTH/VHS family protein (.1) Lus10016556 [exp] 69 / 2e-12 AT3G46540 266 / 3e-88 ENTH/VHS family protein (.1) Lus10040297 [exp] 44 / 0.0001 AT3G46540 191 / 9e-60 ENTH/VHS family protein (.1) Lus10019571 [exp] 0 / 1 AT2G43160 588 / 0.0 ENTH/VHS family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G234100 [exp] 519 / 1e-179 AT5G11710 479 / 2e-164 ENTH/VHS family protein (.1) Potri.014G151300 [exp] 237 / 6e-68 AT2G43160 644 / 0.0 ENTH/VHS family protein (.1.2.3.4) Potri.002G231100 [exp] 228 / 9e-65 AT2G43160 317 / 1e-96 ENTH/VHS family protein (.1.2.3.4) Potri.009G030500 [exp] 68 / 3e-12 AT3G46540 270 / 2e-89 ENTH/VHS family protein (.1) Potri.001G239200 [exp] 66 / 2e-11 AT3G46540 263 / 8e-87 ENTH/VHS family protein (.1) Potri.008G055600 [exp] 42 / 0.0008 AT3G46540 182 / 6e-56 ENTH/VHS family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0009 [flax] [poplar] ENTH_VHS PF01417 [flax] [poplar] ENTH ENTH domain
Representative CDS sequence Show only first row Show all	>Lus10007460 pacid=23178411 polypeptide=Lus10007460 locus=Lus10007460.g ID=Lus10007460.BGIv1.0 annot-version=v1.0 ATGGATTTCATGAAAGTAATCGATCAGACAGTCCGCGAAATAAAGCGAGAAGTGAATCTAAAAGTTCTCAAGGTCCCTGAAATTGAACAGAAGGTGTTGG ATGCCACTAACGATGAGCCCTGGGGTCCTCATGGCACTGTTTTGCAAGAAATTTCGCAGGCTACCAGGAAATACACCGAGTGCCAGATGATTATGAGTGT TCTTTGGACACGGTTGGGTGAGACGGGCAAGGACTGGCGTCTTGTCTACAAGGCACTGTCTGTCATAGAATATTTGGTGGCTCATGGGTCGGAGCGGGCC GGTGATGACATTATAGAACACACTTATCAGATCTCCTCGCTTACAAGTTTTGAATATGTTGAGCCAAGTGGCAAGGACATGGGAATCAATGTGAGAAAGA AAGCTGAAACAATCGTCAACTTATTAAATAGCCAGGAGAAAATACAGGAAGTAAGGAACAAAGCTGCTGCCAATCGCGACAAGTACTTTGGACTTTCTTC CACCGGAATAACTTCCAAGTCAAGTGCAGCCTCATTTGGTAGTAGCAGCAACAGGAGCAGTGATCGGTATGGAGGCTTTAGTGGTGCAAAAGATATTGAT GGTTTTAGAGATAGCTACAAGAGCAAGGATCGGTATGAAGAAAAGACAGATAAGGATGCATATGTAAAATCTCGGCGTGCAGTTGTAGGCGATAATCAAG GAAGCACTGGGGATAAGGGTTCTACTGGCTTACGCAGCAAGGGTCAATCTAAGTTCACAGTGAAGTTTAGTGACAGCGGTAAAGAAAGCTCAGTGCCGTC TCAACAGGCTGGTCTTCCCTCTATCAATATTGATGAAGATTTGGATGATGATTTTGATCCGCGGGGAAATGCAGGAAGTAAGTCAACTGCTGAAACGTCC AGCCAAGTCGATCTATTTGGACAAAGTTTGATGGGTGACCTTTTGGATGTGCAACCTTCGGCTGCTCCTGCAGACATCTCTATTAATGATGACAGTTCCA GGGATGTTGATCTGTTTGCTGATGCAGATTTTGTATCAGCTGAACCCCAGGTTGACAAGGGAGCAAGCTCTCAAGGACAGGTTAATCTGTTTGCTTCTCA ACCTGGTGCACCTTCTGCTGCTGTTGCTCCGTCAACAATTGATTTCTTTTCTGCTGGTGAACCAACTTTACCAGAGTCCAAACCTCAGAAACTTGACACT ACAACCACCAATGTTGTTGACCCATTCGCTGCAGTCCCTATGTACAGTTTTGATGGATCTGATCCTTTCGGTGAATTCAGTTCTAGTTCCAGTTCTGCTA CAACTGAACCAGTCAAGAATTCTGTAAACGACGCTGGCATAATTAATATGGATGGGAACGTTTTGAAGGATTCCAAGCCTCCTGCAGCAGAGCAAAAGCA GAATTTCCAGGTGAAATCTGGTATATGGGCTGATTCTTTGAGCCGTGGGATAATCGATCTTAATATATCTGCTCCAAAGAAGGTATCCCTGGTAGATGTT GGAGTGGTGGGTGAACTTGGAGGCGGACAGGATGAGAAAGAGAAGACGACAGCAGCACCCCCGAATTTTTATATGGGGAGAGCAATGGGGACTGGTTCAG GTCTGGGGATGTCAGGGTTTGGTAGTGCCTCTCAAGGGTATGCTGCTGCTGCACCTTCATCTGGGTTTACTGCTACGTCGTCATCACAACCAAAGGCAGG TGGTAGTGGTGGGACTGGAGATGACTTCTTCTCGAGCCTTAGCAACCAACAATACCAGTTTGGTGCTTTCAAGTAG
AA sequence Show only first row Show all	>Lus10007460 pacid=23178411 polypeptide=Lus10007460 locus=Lus10007460.g ID=Lus10007460.BGIv1.0 annot-version=v1.0 MDFMKVIDQTVREIKREVNLKVLKVPEIEQKVLDATNDEPWGPHGTVLQEISQATRKYTECQMIMSVLWTRLGETGKDWRLVYKALSVIEYLVAHGSERA GDDIIEHTYQISSLTSFEYVEPSGKDMGINVRKKAETIVNLLNSQEKIQEVRNKAAANRDKYFGLSSTGITSKSSAASFGSSSNRSSDRYGGFSGAKDID GFRDSYKSKDRYEEKTDKDAYVKSRRAVVGDNQGSTGDKGSTGLRSKGQSKFTVKFSDSGKESSVPSQQAGLPSINIDEDLDDDFDPRGNAGSKSTAETS SQVDLFGQSLMGDLLDVQPSAAPADISINDDSSRDVDLFADADFVSAEPQVDKGASSQGQVNLFASQPGAPSAAVAPSTIDFFSAGEPTLPESKPQKLDT TTTNVVDPFAAVPMYSFDGSDPFGEFSSSSSSATTEPVKNSVNDAGIINMDGNVLKDSKPPAAEQKQNFQVKSGIWADSLSRGIIDLNISAPKKVSLVDV GVVGELGGGQDEKEKTTAAPPNFYMGRAMGTGSGLGMSGFGSASQGYAAAAPSSGFTATSSSQPKAGGSGGTGDDFFSSLSNQQYQFGAFK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11710			ENTH/VHS family protein (.1)		Lus10007460 [exp]	0	1
AT4G34490		ATCAP1	cyclase associated protein 1 (...		Lus10026338 [exp]	2.0	0.9355
AT5G11890		EMB3135	EMBRYO DEFECTIVE 3135, unknown...		Lus10026428 [exp]	2.4	0.9140
AT1G14020			O-fucosyltransferase family pr...		Lus10026624 [exp]	3.2	0.9245
AT2G40280			S-adenosyl-L-methionine-depend...		Lus10007520 [exp]	3.5	0.8959
AT5G26667		PYR6	P-loop containing nucleoside t...		Lus10031611 [exp]	4.5	0.8903
AT3G09740		ATSYP71, SYP71	syntaxin of plants 71 (.1)		Lus10026495 [exp]	7.3	0.8707
AT1G05170			Galactosyltransferase family p...		Lus10015107 [exp]	9.2	0.8730
AT2G20840			Secretory carrier membrane pro...		Lus10018562 [exp]	9.2	0.9058
AT5G52060		ATBAG1	BCL-2-associated athanogene 1 ...		Lus10027420 [exp]	11.1	0.8577
AT4G29130		GIN2, ATHXK1	GLUCOSE INSENSITIVE 2, ARABIDO...		Lus10037588 [exp]	11.8	0.8957

Compare expression of checked genes

Lus10007460 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.