Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11700 1632 / 0 unknown protein AT4G32920 1468 / 0 glycine-rich protein (.1.2.3) AT5G47020 1040 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005497 [exp] 2164 / 0 AT5G11700 1842 / 0.0 unknown protein Lus10043045 [exp] 1324 / 0 AT5G11700 1537 / 0.0 unknown protein Lus10011144 [exp] 1185 / 0 AT5G11700 1470 / 0.0 unknown protein Lus10007257 [exp] 803 / 0 AT5G47020 1321 / 0.0 unknown protein Lus10000229 [exp] 135 / 2e-36 AT4G32920 182 / 5e-54 glycine-rich protein (.1.2.3) Lus10007259 [exp] 124 / 7e-31 AT5G47020 218 / 2e-64 unknown protein Lus10007258 [exp] 99 / 1e-23 AT5G47020 169 / 1e-49 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G234500 [exp] 1748 / 0 AT5G11700 1793 / 0.0 unknown protein Potri.018G058300 [exp] 1729 / 0 AT5G11700 1779 / 0.0 unknown protein Potri.003G086200 [exp] 1094 / 0 AT5G47020 1620 / 0.0 unknown protein Potri.001G148300 [exp] 1079 / 0 AT5G47020 1624 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007461 pacid=23178391 polypeptide=Lus10007461 locus=Lus10007461.g ID=Lus10007461.BGIv1.0 annot-version=v1.0 ATGGCTCCATTCCCTCTTACTCTCCTCCATTCTCTCTTCTTCTTCGCCCTCTTATCATCATCCGCCGCCATACCCGATTCCTCTTCTTCGTATTCCGATG CCGATGCGGATTCCGATTCCGCTTCCTACCTTTCTCTCTTCCATCAAGACTACTCTCCTCCCTCCCCTCCTCCTCCGCCTCCCCACCCCCCTCCCCTTTC ATGCACCGACGACCTCCACGGAATCGGCTCCTTGGACAACACTTGCCAGATAATCTCCGATGTCAACCTCACCGCCGACGTCTACATCCAGGGCCAAGGC AACTTCTACATACACCCTGGCGTCAGCTTCAGCTGTCCTTCCCCTGGCTGTTCAATCACCCTCAACATCTCCGGCAACCTCACCCTCGCTCCCAACTCCT CCATCGTCGCCGGTGCCTTTGAACTCTTCGCCTCCAATGCCTCCTTTCTTAACGGCACCTTCGTCAACACCACCGGCTTGGCTGGGGATCCGCCTCCCCA AACCAGTGGCACGCCTCAAGGTGTCGATGGTGCTGGTGGAGGCCATGGCGGTCGTGGCGCTGCTTGCTTAGTCGACCTCACCAAGCTCCCCGAAGATATT TGGGGTGGGGATGCATACTCATGGGCTAGTTTGCAGGAGCCTTGTAGTTATGGGAGCAAAGGTGGAACTACCAGTAACGAGGAGGATTACGGTGGGGGTG GCGGTGGAATGGTGAGGATGACCATTGATGATTATATAGAGGTTGATGGGCTTGTTTTAGCTGATGGAGGGGACGGTGGTACCAAGGGAGGCGGTGGTTC TGGCGGTAGCATTTACATCAAGGCTTATAAAATGACGGGTAGTGGCGAGATTAGTGCTTGTGGAGGAAGTGGTTTTGCTGGAGGAGGTGGAGGAAGAATT TCTGTGGACATTTTCAGTAGGCATGATGATCCTCGAGTATTTGTGCATGGAGGAAGTAGTCGTGGCTGTCCGGAAAACGCTGGGGCTGCTGGGACCCTAT ATGATGCTGTTCCACGAAGTCTTATTGTTAGCAATGACAATCTGTCAACGAATACAGACACTCTTCTCCTGGACTTTCCTAATCAACCCCTTTGGACGAA CATTTATGTCCGCAATCATGCTCGTGCCACTGTTCCATTGCTCTGGAGTCGTGTCCAGGTGCAAGGACAGATAAGTTTGCTGTCTGGCGGACTACTGAGT TTTGGGCTAGCTCACTACGCTACTTCTGAATTTGAACTATTGGCTGAAGAACTATTAATGAGCGACTCTGTAATGAAGGTTTACGGAGCTCTACGCATGA CTGTGAAAATGTTTTTGATGTGGAATTCCGAAATGCTCATAGATGGAGGTGAAGATGCTGCTGTTGCTACTTCCTTGCTTGAAGCCAGTAATTTAGTTGT TCTGAGGGAGTCATCGGTCATACAGTCTAATGCGAATCTGGGTGTTCATGGACAAGGTTTGTTGAATTTGTCTGGACCAGGTGACAGGATTGATGCCCAA CGTCTTGTCCTATCATTGTTCTACGGTGTTCATGTTGGTCCTGGATCTGTTTTACGTGGTCCTCTGGAGAATGCAACTAGTGATGCTATTACACCACAAC TACATTGTGACTTTGAAGATTGCCCTGTTGAACTACTTCATCCGCCTGAAGACTGCAACGTGAATTCATCACTGTCCTTTACTCTCCAGATATGCCGAGT TGAGGATATTACTGTCGAGGGACTAGTAGAAGGATCTGTTGTCCATTTCCATCGTGCAAGAACTATATCAGTCCAACCTTCAGGAATAATTAGTGCATCT GGAACAGGCTGCACAGGCGGTGTGGGAAGAGGTAATTTCTCTAGTGATGGTGTTGGTAGTGGTGGAGGCCACGGTGGCAAAGGTGGGCTAGGATGTTACA ATGATAGTTGCATTGATGGCGGCATTTCATACGGAAACCCAGTCTTTCCATGTGAACTTGGTAGTGGCAGTGGGTACGGAAGTTTGGCTGGCTCAACTGC AGGGGGTGGGATCATAGTTATGGGTTCTCTGGAGCATCCATTGTCAAGCTTGTCTGTTAAAGGATCAGTCAGAGCTGATGGAGAAAGTTTTCAACAAACT ATTAAACGTAGGGAGTTCGCTGTTATGAATAGTAGTGGTTGGGGACCTGGGGGTGGATCTGGGGGAAGCATACTTATGTTCTTGAGGACGATAGAACTTG CTGAGACTGCTCTACTTTCAAGTTCTGGTGGATATGGTAGCCCACAAGGGAGTGGTGGAGGTGGAGGAGGGAGGATTCACTTTCACTGGGCGGATATTCC AGCTGGTGACGTGTACCAGCCAATTGCCAGTGTGAAAGGGGGCATTCACTCTAGGGGAGGGCTAGGTAAGGATGGAGGTGGTTCTGGGGGAAACGGAACA GTAACTGGAAAAGCCTGCCCGAAAGGACTATATGGAGTATTTTGCAAGGAATGTCCAGCTGGAACTTACAAGAACGACACTGGATCTGACGAAGCCCTTT GCCGATCATGTCCTCCTAATGAGCTTCCTAATCGTGCTCTATACATTTCTGTCAGAGGTGGTATTGCTGAAACACCATGTCCATATAGATGTATTTCCGA CAGATTTCACATGCCCCACTGCTATACGGCCCTTGAAGAGTTGATTTACACATTTGGTGGACCATGGTTATTTGGACTTCTTCTTGTGGGTCTACTCATT CTTTTGGCACTGGTACTAAGTGTTGCCCGGATGAAATTTGTTGGTGGTGATGAACTACCTGGCCCAGCTCCCACCCAACACGGTTCTCAAATAGATCACT CCTTTCCGTTTTTGGAATCATTGAATGAGGTGCTAGAAACAAACAGAGCTGAGGAGTCCCAGAGTCATGTGCACAGGATGTATTTTCTGGGTCCTAATTC TTTCAGTGAACCTTGGCATCTTCCACACTCACCCCCTGAGCAAATAAAAGAGACAGTATACGAAGGCGCATTTAATACATTTGTCGATGAGATTAATGCA ATAGCTACGTATCAATGGTGGGAAGGTGCCATCCACAGTATCCTTTCTGTAACTTTATATCCCTTGGCATGGTCATGGCAGCATTGGCGTCGCAGAATCA AACTGCAAAGACTTCGGGAGTTTGTTCGATCAGAGTATGATCATGCTTGCTTACGCTCTTGCCGGTCCAGGGCTCTCTATGAAGGGATTAAGGTTGCTGC CACTTCTGATTTAATGCTTGCATATGTTGACTTCTTCCTCGGTGGAGATGAGAAGAGAAGTGACCTTCCTCCTCGACTGTATCAACGATTTCCAATGTCT ATAATTTTTGGGGGTGATGGCAGCTATATTACTCCATTCTCTATTCAAAGTGATAACATTGTCAGCAGTCTCATGGGCCAGCTGGTCGCTCCCACCACAT GGTATCGAATGGTGGCTGGTCTGAATGCACAACTTCGATTAGTTCGTCGAGGACGGCTGAGAGTAACTTTCAAGCCAGTCATCAAATGGCTGGAAACTCA TGCTAACCCAGCTTTGAAAGTGTACCAAGTACAAGTTGATCTTGTGAGGCTTCAGGCTACAGCTTGTGGTTATCGCCAGTATGGACTTTTGGTTTATGCT GCTGATGATGAAAACCAGTATGCATCTAGTGACAGTCTTGAGGATACAAAGCCAACCACACAACATTCACGCATGAAGAAGACGGAAGGAGAATATGCAT TTGGTCATTTGAGCGAGCCTATTCTCTTAACCCGATCTGATAGCAGCGAGAGTTATTTGAGGCGGATGAAGACTCATGGCTGTGTGATTGATGCTGACAA TTTAAAAACACTTGAAGAGAAGAGAGATATTTTTTACATTCTCTCTCTCTTAGTTTATAATACTAAACCAGTTGGCCACCAGGATCTTGTTGGTTTGGTC ATCTCAATGCTGCTTCTAGGAGATTTTAGCTTAGTGTTGCTTACTTTGCTCCAGCTGTATTCAATTTCACTGGGTGATGTTTTCCTGGTTTTGTTCATCC TGCCTCTGGGTATTCTTCTGCCATTTCCTGCTGGGATCAATGCTTTATTCAGTCATGGACATAGACGTTCAGCTGGGCTTGCGCGTATCTATGCACTGTG GAATATTACATCATTGATGAATGTGGTTGTTGCTTTTGTGTGCGGGTACGTCCACTACATCAGTCAATCGTCATCAAGCAAGAAGTTCCCCTTTCAGCCG TGGAATATCAGCATGGATGAGAGTGAATGGTGGATATTCCCGGGGGCACTGGTTATATGTAAAATGGTGCAGTCCCAGCTAGTGAATTGGCATGTGGGAA ATCTAGAGATTCAAGACCGTTCCCTGTACAGTAATGATTTCCAGCTGTTCTGGCAGTCTTGA
AA sequence Show only first row Show all	>Lus10007461 pacid=23178391 polypeptide=Lus10007461 locus=Lus10007461.g ID=Lus10007461.BGIv1.0 annot-version=v1.0 MAPFPLTLLHSLFFFALLSSSAAIPDSSSSYSDADADSDSASYLSLFHQDYSPPSPPPPPPHPPPLSCTDDLHGIGSLDNTCQIISDVNLTADVYIQGQG NFYIHPGVSFSCPSPGCSITLNISGNLTLAPNSSIVAGAFELFASNASFLNGTFVNTTGLAGDPPPQTSGTPQGVDGAGGGHGGRGAACLVDLTKLPEDI WGGDAYSWASLQEPCSYGSKGGTTSNEEDYGGGGGGMVRMTIDDYIEVDGLVLADGGDGGTKGGGGSGGSIYIKAYKMTGSGEISACGGSGFAGGGGGRI SVDIFSRHDDPRVFVHGGSSRGCPENAGAAGTLYDAVPRSLIVSNDNLSTNTDTLLLDFPNQPLWTNIYVRNHARATVPLLWSRVQVQGQISLLSGGLLS FGLAHYATSEFELLAEELLMSDSVMKVYGALRMTVKMFLMWNSEMLIDGGEDAAVATSLLEASNLVVLRESSVIQSNANLGVHGQGLLNLSGPGDRIDAQ RLVLSLFYGVHVGPGSVLRGPLENATSDAITPQLHCDFEDCPVELLHPPEDCNVNSSLSFTLQICRVEDITVEGLVEGSVVHFHRARTISVQPSGIISAS GTGCTGGVGRGNFSSDGVGSGGGHGGKGGLGCYNDSCIDGGISYGNPVFPCELGSGSGYGSLAGSTAGGGIIVMGSLEHPLSSLSVKGSVRADGESFQQT IKRREFAVMNSSGWGPGGGSGGSILMFLRTIELAETALLSSSGGYGSPQGSGGGGGGRIHFHWADIPAGDVYQPIASVKGGIHSRGGLGKDGGGSGGNGT VTGKACPKGLYGVFCKECPAGTYKNDTGSDEALCRSCPPNELPNRALYISVRGGIAETPCPYRCISDRFHMPHCYTALEELIYTFGGPWLFGLLLVGLLI LLALVLSVARMKFVGGDELPGPAPTQHGSQIDHSFPFLESLNEVLETNRAEESQSHVHRMYFLGPNSFSEPWHLPHSPPEQIKETVYEGAFNTFVDEINA IATYQWWEGAIHSILSVTLYPLAWSWQHWRRRIKLQRLREFVRSEYDHACLRSCRSRALYEGIKVAATSDLMLAYVDFFLGGDEKRSDLPPRLYQRFPMS IIFGGDGSYITPFSIQSDNIVSSLMGQLVAPTTWYRMVAGLNAQLRLVRRGRLRVTFKPVIKWLETHANPALKVYQVQVDLVRLQATACGYRQYGLLVYA ADDENQYASSDSLEDTKPTTQHSRMKKTEGEYAFGHLSEPILLTRSDSSESYLRRMKTHGCVIDADNLKTLEEKRDIFYILSLLVYNTKPVGHQDLVGLV ISMLLLGDFSLVLLTLLQLYSISLGDVFLVLFILPLGILLPFPAGINALFSHGHRRSAGLARIYALWNITSLMNVVVAFVCGYVHYISQSSSSKKFPFQP WNISMDESEWWIFPGALVICKMVQSQLVNWHVGNLEIQDRSLYSNDFQLFWQS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11700			unknown protein		Lus10007461 [exp]	0	1
AT5G07740			actin binding (.1)		Lus10003482 [exp]	2.0	0.9187
AT3G16785		PLDZ1, PLDZETA1...	PHOSPHOLIPASE D ZETA1, PHOSPHO...		Lus10037708 [exp]	3.7	0.9081
AT2G35630		GEM1, MOR1	MICROTUBULE ORGANIZATION 1, AR...		Lus10038405 [exp]	5.0	0.9314
AT3G16785		PLDZ1, PLDZETA1...	PHOSPHOLIPASE D ZETA1, PHOSPHO...		Lus10016830 [exp]	10.6	0.8732
AT1G49340		ATPI4K ALPHA, A...	Phosphatidylinositol 3- and 4-...		Lus10011285 [exp]	10.8	0.9144
AT1G11160			Transducin/WD40 repeat-like su...		Lus10011224 [exp]	13.4	0.8945
AT5G27970			ARM repeat superfamily protein...		Lus10000943 [exp]	14.7	0.9071
AT1G49340		ATPI4K ALPHA, A...	Phosphatidylinositol 3- and 4-...		Lus10040481 [exp]	15.0	0.9101
AT3G43300		BEN1, ATMIN7	BFA-VISUALIZED ENDOCYTIC TRAFF...		Lus10009803 [exp]	16.0	0.9104
AT4G39420			unknown protein		Lus10005786 [exp]	16.6	0.9094

Compare expression of checked genes

Lus10007461 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.