Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32820 1821 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005496 [exp] 1046 / 0 AT4G32820 585 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G057900 [exp] 2239 / 0 AT4G32820 2023 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007462 pacid=23178416 polypeptide=Lus10007462 locus=Lus10007462.g ID=Lus10007462.BGIv1.0 annot-version=v1.0 ATGTTTTTGTTTCATTGTTTGTTTCCTCAGTTCTCCTTCGCAGCCATCAACGATACTGATTCCACGCATCAATGGGAACCTTTAGCTCCCACGAAAGAAG CTCAGGCCGGTCCACTCTCCATCTTTTTTTCCATCCAAATTTCATACACCATTTTCTATCATCCTTACCAGTTTGCCTGCAGGAATCTCATCTTACCCAA ACTTACCATGACGGTTGATGGGAATGCTAGCGATAGTCACATGCAGCAGCTCAGATTTTTGGCATTGAAAAACTTAGCCACTGTTTTCCTCCAGCAAGGT TCAGCACATTATCAGAGTGCTCTTCAATGTTACCTTCAAGCCGTTGAGATTGACACCAAAGATTCTGTTGTCTGGAATCAGCTGGGAACATTGTCGTGTT CCATGGGTTTGCTTAGCATTTCACGATGGGCATTTGAGCAGGGACTTCTATGCAGCCCAAACAATTGGACATGCATGGAGAAGTTATTAGAAGTTCTAAT AGCAATTGGTGATGAGGTTTCCTGCCTTGCCGTAGCGGAGTTAATTTTGAGGCACTGGCCTTCTCATTCTCGTGCTTTGCATGTGAAATGTACTATCGAA GAGTCAGATCCAGTTCCATTTGCACCTAGAGGTATTGATAAACTAGAACCAAAACATGCCCGCCTTAAGTTCCTAGACAAGAGGAAAAGAACTGAGGAGA ATCTTGATGAGGTTCTTGCTAGAAAGCGGCTAAATCAGACCATTGAGTTGAGCCTGCTTGGAGTTTCATGGGGGGCTCTCATCGATGCCCTTTTGGAGAT CTTACTACCCCTCAGTGGGTATGATACTGAGCTCGGACCTGATAAACTTAAGAAATCTGGGGATATCAGGTTAAGTATAAAACTTCCATCAGATACTAAT ATGGGCTCTCCTGAAAGGAAAAGGCTTATTGACTTCCAGATTAGTCAATGCATGTCTCTCAGTAATAGTAACTCGGAAAAAATTGGTTCTGTTAAAGATA GAGAAATGAATAGTCTCGATGAACAACCTCATGAGAGACGCAGTACTCGTCTTGAAAGGCGTAGGAGTCGTAAACCTAGGAAAGAAGAAATGGGCTATGG TGGCAGCAAGGATTCGGTCAATGTTGTGCTCCAATATCTAGAGCCTTTCATCGTTAGCACATCCTCAGGAGAAAACTCTGAACGGGAAGTTACTTCTTCT GTTCTGCATACTGATAACGCTAAATCACTGGACAAGGAACTGAAGGATATTTCATCGTTTGTGATGGAAACTTCTAAAAATTATGGTGCTTACCATGTCG CCCACTTGCTTCTAGAGCATATTTCGACTGGAGAGTTTATGCGTCCAGATGAATATCCCAAACTCCTAGAATTGGAAAGGTTGACAAGAAATTCGGGTCA AGATAGGACCAGTGAGTGTAGTCTTTTTCTTGCTGAGGTGTACTATGACCTTGCCTTTTTTCCTTCCAATGCTTTGAAGCTCTCAGATTTCCTATCTGAA GCATCATATCATCTTTGCAAAATTGTTGAATCTGTAGCCCTGGACTATCCTTTACCCTTAACCCATGAAAATGCTGGTGGAAGTTGGTTTGATGACAAGT GTTCTGGAGATGAAAACAAAACCTCTTTGGATCACTCTCGTTGCTCGGATCTAAATTCCACAGATACCTTGTCAAGTGAAAAGCTTAACTTCTGGATCCG GTACTATTGGTTGAGTGGGAAACTGTGTGTCTTGGATGGAAACAAGGCGAAGGCTTATGAAGAATACTCTGTTTCCTTGTCGCTGGTGATGAAGAGGGAT AGAATGGGTGACTATTCAGGGAAACTTAGGTTATGTCACCTCAAAGGCGATAAAGAGTTAACCGTAGACAAGATCCTTCATGAAATTAATTTGTTGAAAC TTGATTCCTTGCTTGAAGAAACTGTAAGTGAGTTAATGGAGAAAGAAAAGTACCTGGAGTGCATAAATTTACTTGCCCCACTTTTATTCTCAGTGGAAAA TGTGTTTCTTGATGTGTTTGCATCCTCAACAAATGACGACAAAAACGAGGAATTTACATGCATTGAACTGAAAGCACTTGATATATTAGCTGAGGCTTGT GAGAAGTCAGACCCTATGGATAAAGAGATGTACTTGATGTGTCACCAGCGAAAGCTGCTTATTATCCTGGTACTAGCAGGTATGGTTGAATTTAAACACT CACAGCAGAGATCTAGGTCAAATGCTCTCTCTGCTTATGATGTAGTTCCTAAAGAAACTCCAGCGAAGTGGAATAATCTTGTGGCTCAAGAAGTTAAGGC AATCTCTTGTTCTGCATCCAAGTTAAAGAATTTCTTGGATCCATCTATTGACACGAATGGTATAATCTCCTCCTTGAGTTGCATCAGTGCTTTGCAATCT CTCCTCGTAGTCGTCATGTGCCATGTTGTCATCAATTACCTCTGCAAGAAGTCCTCTGTCCCAGTTACTGCTGATGATACCGAACAAAAGCATGAATGGT ATTTTGTTGATACATGTGTTGCGTTTTGCAGACTTCAACACCTTGTCTCAACCGTTGCAATAAAGACACAAGTTGAATTGATTGTTGGAATCCATGACTT GCTTGCCGAGTATGGCCTCTGCTGTGCTGGTAAGGCTGGTGAAGGGGAGGGAGGAACCTTTCTTAAATTTGCAATTAAGCATCTATTAGCTTTGGACATG AAGCTTAGGTCCAACTCAAAATCTTCCAATATGCAACCCATTCACCTCGATCAGCAGCAATGTCCACACGGACAGGGCAACACATCAGGCAAAGAATTTA AATCAGACTTGATGGAATTGGATACCGGTGAGTTGGAGAGTCGGCACATTCATGACGGTGAAAATGGAGTATCTGAATGCAGTCAATCACATGAAACCCA GAAAAGAGACATTGTAAGAGAATGTGAAAAACAACAGGGAAATGAAGATCCGGAGCAAGTGGATAAACCTAGTGAACAGAATGCGGAATCTAGAAATGAA ATGACTGAAGAAGAGAGGGAAGAACTTGAGTCAATGATTGATAATGCACTAGATCAGTGTTTTTTTTGCTTGTATGGACTGAATCTTAGATCTGATTCAT CCTATGATGAGGATCTGGCCACTCATAAAAATACTACTCGTGGAGATTACCAGACCAAAGAACAGTGTGTGGACGTTTTCCAGTACATACTACCTAGTGC AAAGGCTTCTTCTAAAACTGGACTAGTTAAACTTCGGAGAGTGTTGAGAGCTATTCGCAAACAGTTTCCACAACCGCCTCAAGATCTTTTGGATGGCAAT GTGATTGATAAATTTTTAGATGATCCAGAATTGTGTGAAGACAGATTGTCAGATGAGGCTGGATCTGATGGTTATCTGGAGACTGTAATGAAGACTCTAC TACCTGATGTAGGAAATGTCAAGCAGTACAGGGCATCAATCGCTAAGCGAGACGTGCTTCTTTTCAGCTCTGAGCCATATTCTGAAGTGTACTGTAACCT CTACTATTTCCTAGCTTTGTCTGAGGAAATGAGTGCAACTGATAAATGGCCAGGCTTTGTACTTACGAAGGAAGGAGAAGATTTTGTCCAGCAAACTGCT AGTCTCTTCAAGTATGACCTGCTTTATAATCCTCTGCGCTTTGAAAGTTGGCAACGACTTGCAAAAATTTATGATGAGGAAGTGGACTTGTTACTAAATG ACGGCAGTAAGCATATAAATGTAGTGGGATGGAGAAAGAATGCAACTCTTCCACAGAGAGTTGACAGAAGTCGAAGGAGAAGCAGGCGTTGTTTGCTAAT GAGTTTGGGTTTGGCGAATACATCGTCTCAGCAGTGTGAGATACACGAGCTACTGGCGTTAGTATACTATGACAGCCTTCAGAATGTGGTGCCCTTCTAT GACCAACAATCTATTGTACCATCCAAAGATGCAGCCTGGGTTGCGTTCTGTGAGAACTCAATGAAGCATTTTAAGAAAGCTTACTCACACAAGCAGGATT GGTCACATGCATTTTACATCGGAAAACTCTGTGAAAAGCTTGGATACCCATATGAAAGATCGCTATCATACTATAACAATGCTATCTCATTGAACCCTTC AGCTGCAGACCCTGCATATAGGATGCATGCCTCACGTTTGAAGTTACTTCACAAGTGTGGAAAGCAGGAGTTAGAAGCTCTTAAGGTCCTTTCTAGGCAT TCCTTCCTTCAATCAACAAAGGATGCTGTCATGAGCATTTTTGGAGAAATTGGCTCAGAAATTGATGATACAATTGACCGACAAGTCGGTGATATATCAG AAGACAGAGGCCATGACAAATCAAACCACTTAGAGGATGTGTGGCATATACTATACCATGATTGTCTTTCTGCTTTGGAAAATTGCACTGAAGGAGATCT GAAACATTTTCACAAGGCCAGATACATGCTTGCGCAAGGGTTGTACAAAAGGGGGGTGGCTGGGGATCTAGAGAGGGCAAAAGATGAACTTTCTTTTTGC TTCAAATCCTCCCGTTCTTCTTTCACCATTAATATGTGGGAAATTGATGGCATGGTCAGAAAGGGAAGACGCAGAACACCAGGTGTTGCTGGAAACAAAA AGGTCCTTGAGGTGAACTTGCCAGAAAGTTCTCGAAAATTCATTACGTGCATCCGGAAATATTTGTTGTTTTACTTGAGGTTATTGGAGGAGACTGGTGA TACTTGCACTCTTGAGCGTGCTTTTGCATCACTTCGTGCAGACAAAAGGTTCTCATTGTGTGTTGAAGATCTTGTACCAGTAGCTCTTGCAAGATTGGTA AAGGCCCTGGTATCATCCATCGATCAAGGGGAGAATGCCAAATGCAGCTCAGAGCACCAACTGGAGAAGGTATTCTCGTTGTTCATTGAACAGGGGAGCC TATGGCCAGAGATACTAAGCTTGGCAGTGACTCAAAACCCAGAACTTACAGATATCAGCTTATATGGATATCTTCATAGATACATATTGTCATTGGAAGG AAATGGAAAGCTTGAGACGCTCGAAGTTATAAATGAGAAGATCCGTAAGCGGTTTAAAAATCCGAAGTTGTTGAATAGCAATTGTGCTAGAGTTTGCCGG CATGCTTCTGTTGCTTGGTGTCGCAGTCTCATAATTGGGGTGGCCTTGATTACACCATTTCCATCTGGAATTCAACATGAGATTCCGACTGATAATGCTG CAGATGATGCCTTGGTAAGCAATCAGTCACTTTATCTTGATCTACAAGCAAATGAATTGTGGAATTCATTATCAGACTTCACCCCTCCAGAGGATCTCGA ATGGAAATGGACTCCAGTCTTGATTAAAATGAAAAATTTAGCAGTTAGAAAAGCGGAAGATAAAGATTTGGAAGCCGCTAACTCTTTGCTAAAAAGCTGT TACAATCTCTATCGAGAGAGTTCTTGTGGGTTGCTTCCTTCTGGCATCAACCTGTACGTGGCACCATCAAAGGTTGCAATGGATACAAAAGTCCAGCTCG AACTGGATGGCGTTGAAGTTGTTGATCTGAGCATCCCTAGGAAGCTTCTTTTATGGGCTTATGTGCTACTGCATGGACGTTATGCCAGCATTGGAGCCGT TGTAAAATATTGCGAAGAGAATTTCAAGCCGAAGCTGAAAAAGGGAACCCCTAGCTTTTCAACACCATCCTCAAACTCAGGCTTGCCTGCTGCTGCTGCT GCCATGACAGCCCATGGAACAGGGCAGGAAGGATTTAGTGAGGGAGAAGGTGGGGAATCAGGAAGTGAGAAGAGAGTAGCAGCAGCAACACCGACTTCAA ATGAGACTCAAAAGGCTGCTGCTTCTTCTTCTACTTGTGTTGGATGA
AA sequence Show only first row Show all	>Lus10007462 pacid=23178416 polypeptide=Lus10007462 locus=Lus10007462.g ID=Lus10007462.BGIv1.0 annot-version=v1.0 MFLFHCLFPQFSFAAINDTDSTHQWEPLAPTKEAQAGPLSIFFSIQISYTIFYHPYQFACRNLILPKLTMTVDGNASDSHMQQLRFLALKNLATVFLQQG SAHYQSALQCYLQAVEIDTKDSVVWNQLGTLSCSMGLLSISRWAFEQGLLCSPNNWTCMEKLLEVLIAIGDEVSCLAVAELILRHWPSHSRALHVKCTIE ESDPVPFAPRGIDKLEPKHARLKFLDKRKRTEENLDEVLARKRLNQTIELSLLGVSWGALIDALLEILLPLSGYDTELGPDKLKKSGDIRLSIKLPSDTN MGSPERKRLIDFQISQCMSLSNSNSEKIGSVKDREMNSLDEQPHERRSTRLERRRSRKPRKEEMGYGGSKDSVNVVLQYLEPFIVSTSSGENSEREVTSS VLHTDNAKSLDKELKDISSFVMETSKNYGAYHVAHLLLEHISTGEFMRPDEYPKLLELERLTRNSGQDRTSECSLFLAEVYYDLAFFPSNALKLSDFLSE ASYHLCKIVESVALDYPLPLTHENAGGSWFDDKCSGDENKTSLDHSRCSDLNSTDTLSSEKLNFWIRYYWLSGKLCVLDGNKAKAYEEYSVSLSLVMKRD RMGDYSGKLRLCHLKGDKELTVDKILHEINLLKLDSLLEETVSELMEKEKYLECINLLAPLLFSVENVFLDVFASSTNDDKNEEFTCIELKALDILAEAC EKSDPMDKEMYLMCHQRKLLIILVLAGMVEFKHSQQRSRSNALSAYDVVPKETPAKWNNLVAQEVKAISCSASKLKNFLDPSIDTNGIISSLSCISALQS LLVVVMCHVVINYLCKKSSVPVTADDTEQKHEWYFVDTCVAFCRLQHLVSTVAIKTQVELIVGIHDLLAEYGLCCAGKAGEGEGGTFLKFAIKHLLALDM KLRSNSKSSNMQPIHLDQQQCPHGQGNTSGKEFKSDLMELDTGELESRHIHDGENGVSECSQSHETQKRDIVRECEKQQGNEDPEQVDKPSEQNAESRNE MTEEEREELESMIDNALDQCFFCLYGLNLRSDSSYDEDLATHKNTTRGDYQTKEQCVDVFQYILPSAKASSKTGLVKLRRVLRAIRKQFPQPPQDLLDGN VIDKFLDDPELCEDRLSDEAGSDGYLETVMKTLLPDVGNVKQYRASIAKRDVLLFSSEPYSEVYCNLYYFLALSEEMSATDKWPGFVLTKEGEDFVQQTA SLFKYDLLYNPLRFESWQRLAKIYDEEVDLLLNDGSKHINVVGWRKNATLPQRVDRSRRRSRRCLLMSLGLANTSSQQCEIHELLALVYYDSLQNVVPFY DQQSIVPSKDAAWVAFCENSMKHFKKAYSHKQDWSHAFYIGKLCEKLGYPYERSLSYYNNAISLNPSAADPAYRMHASRLKLLHKCGKQELEALKVLSRH SFLQSTKDAVMSIFGEIGSEIDDTIDRQVGDISEDRGHDKSNHLEDVWHILYHDCLSALENCTEGDLKHFHKARYMLAQGLYKRGVAGDLERAKDELSFC FKSSRSSFTINMWEIDGMVRKGRRRTPGVAGNKKVLEVNLPESSRKFITCIRKYLLFYLRLLEETGDTCTLERAFASLRADKRFSLCVEDLVPVALARLV KALVSSIDQGENAKCSSEHQLEKVFSLFIEQGSLWPEILSLAVTQNPELTDISLYGYLHRYILSLEGNGKLETLEVINEKIRKRFKNPKLLNSNCARVCR HASVAWCRSLIIGVALITPFPSGIQHEIPTDNAADDALVSNQSLYLDLQANELWNSLSDFTPPEDLEWKWTPVLIKMKNLAVRKAEDKDLEAANSLLKSC YNLYRESSCGLLPSGINLYVAPSKVAMDTKVQLELDGVEVVDLSIPRKLLLWAYVLLHGRYASIGAVVKYCEENFKPKLKKGTPSFSTPSSNSGLPAAAA AMTAHGTGQEGFSEGEGGESGSEKRVAAATPTSNETQKAAASSSTCVG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32820			Tetratricopeptide repeat (TPR)...		Lus10007462 [exp]	0	1
AT2G25170		CKH2, SSL2, GYM...	SUPPRESSOR OF SLR 2, GYMNOS, C...		Lus10005339 [exp]	2.0	0.9079
AT3G07160		CALS9, ATGSL10	glucan synthase-like 10 (.1)		Lus10042959 [exp]	3.0	0.9151
AT2G25170		CKH2, SSL2, GYM...	SUPPRESSOR OF SLR 2, GYMNOS, C...		Lus10041019 [exp]	4.0	0.8901
AT2G26780			ARM repeat superfamily protein...		Lus10036052 [exp]	5.5	0.8874
AT2G31970		ATRAD50, RAD50	DNA repair-recombination prote...		Lus10016643 [exp]	6.2	0.8569
AT1G50030		TOR	target of rapamycin (.1.2)		Lus10037246 [exp]	7.9	0.8995
AT2G36850		CHOR, ATGSL8, A...	CHORUS, glucan synthase-like 8...		Lus10014796 [exp]	8.4	0.8779
AT1G33980		ATUPF3, UPF3	Smg-4/UPF3 family protein (.1....		Lus10037346 [exp]	8.5	0.8708
AT3G07160		CALS9, ATGSL10	glucan synthase-like 10 (.1)		Lus10032463 [exp]	8.8	0.8838
AT1G63490			transcription factor jumonji (...		Lus10008495 [exp]	8.8	0.8728

Compare expression of checked genes

Lus10007462 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.