Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60600 254 / 1e-84 (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, VAP27-1, VAP27, (AT)VAP, (AT)VAP, (A VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) AT2G45140 253 / 1e-84 PVA12 plant VAP homolog 12 (.1) AT4G00170 210 / 1e-67 Plant VAMP (vesicle-associated membrane protein) family protein (.1) AT2G23830 185 / 4e-59 PapD-like superfamily protein (.1) AT1G51270 170 / 1e-49 structural molecules;transmembrane receptors;structural molecules (.1.2.3.4) AT5G47180 146 / 7e-43 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2) AT1G08820 146 / 3e-41 VAP27-2 vamp/synaptobrevin-associated protein 27-2 (.1.2) AT4G21450 65 / 4e-12 PapD-like superfamily protein (.1.2.3) AT4G05060 64 / 2e-11 PapD-like superfamily protein (.1) AT5G54110 60 / 2e-10 ATMAMI membrane-associated mannitol-induced (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028937 [exp] 455 / 2e-160 AT3G60600 305 / 2e-101 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) Lus10008512 [exp] 330 / 2e-114 AT2G45140 296 / 7e-102 plant VAP homolog 12 (.1) Lus10010360 [exp] 236 / 7e-78 AT4G00170 311 / 5e-108 Plant VAMP (vesicle-associated membrane protein) family protein (.1) Lus10015885 [exp] 236 / 1e-77 AT2G45140 307 / 2e-106 plant VAP homolog 12 (.1) Lus10036495 [exp] 234 / 3e-77 AT4G00170 316 / 4e-110 Plant VAMP (vesicle-associated membrane protein) family protein (.1) Lus10009279 [exp] 238 / 4e-71 AT4G00060 1034 / 0.0 maternal effect embryo arrest 44, Nucleotidyltransferase family protein (.1) Lus10000032 [exp] 152 / 1e-46 AT2G45140 148 / 7e-46 plant VAP homolog 12 (.1) Lus10033837 [exp] 154 / 3e-43 AT1G08820 256 / 2e-80 vamp/synaptobrevin-associated protein 27-2 (.1.2) Lus10000591 [exp] 136 / 6e-39 AT5G47180 277 / 5e-95 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G076100 [exp] 291 / 2e-99 AT2G45140 262 / 1e-88 plant VAP homolog 12 (.1) Potri.001G152000 [exp] 286 / 1e-97 AT2G45140 296 / 6e-102 plant VAP homolog 12 (.1) Potri.014G060900 [exp] 260 / 2e-87 AT2G45140 328 / 9e-115 plant VAP homolog 12 (.1) Potri.002G144000 [exp] 243 / 1e-80 AT3G60600 298 / 1e-102 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) Potri.002G144800 [exp] 228 / 2e-74 AT4G00170 313 / 5e-109 Plant VAMP (vesicle-associated membrane protein) family protein (.1) Potri.013G031400 [exp] 154 / 2e-44 AT1G08820 273 / 5e-89 vamp/synaptobrevin-associated protein 27-2 (.1.2) Potri.005G044900 [exp] 150 / 8e-43 AT1G08820 261 / 4e-84 vamp/synaptobrevin-associated protein 27-2 (.1.2) Potri.003G082500 [exp] 138 / 5e-40 AT5G47180 281 / 1e-96 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2) Potri.001G152100 [exp] 137 / 2e-39 AT5G47180 229 / 4e-76 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2) Potri.010G031601 [exp] 130 / 9e-36 AT2G45140 112 / 4e-29 plant VAP homolog 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0556 [flax] [poplar] PapD-like PF00635 [flax] [poplar] Motile_Sperm MSP (Major sperm protein) domain
Representative CDS sequence Show only first row Show all	>Lus10007463 pacid=23176473 polypeptide=Lus10007463 locus=Lus10007463.g ID=Lus10007463.BGIv1.0 annot-version=v1.0 ATGAGCACGGGAGAGCTCCTCACTATCGAACCTCTCGAACTCAAATTCCCATTTGAATTGAAGAAGCAGATCTCATGTTCCCTCCAGCTGTCCAATCAAA CCGACAGTCATGTGGCTTTCAAGGTCAAAACGACGAATCCGAAGAAGTACTGCGTTCGGCCAAACGCAGGGGTTGTTTTGCCTCGTTCAACATGTGACAT AATGGTAACAATGCAAGCACAAAAGGAAGCTCCTGCTGATATGCAATGCAAGGATAAGTTTCTGCTTCAGAGCGTAAAAGCTCCTGATGGTTCATCTGCA AAGGATATCACTGCGGAGATGTTCAATAAGGAGGCGGGACATCTGGTGGAGGAAACTAAGTTGAGGGTTGTCTATGTTTCTCCACCTCAACCACCTTCGC CTGTTCCTGAAGGTTCGGAGGAGGGGTCTTCACCTCGCGGTTCTGTCTCGGATAATGGGCATGTGAACGGTGCCGAGTTTTCTGTTGCCTCAAAAGCATT TGTCCAACGGTTTGATACAGATGATAAGTCTCCAGAGGCTAAAGCTCTCATTACAAAGCTAACTGAAGAAAAGAACAGTGCCGTTCAGCTAAATAACAAA CTTCGTCAGGAATTACTTGGTATTGCAACGAATCAAGATAGATTTATGATCTTCGACGCTAAGAGGATATCATATGTACTGGTGGAAATTTCAGGAAATG TTGAGGCGAGAGGGGAGCAAAAGCAGCGGAGGGGTGTCGCTGATGTTCGTGATCATTGTGGGTTTACTGGGCATATTGATGGGATACCTCTTGAAGAAGA CGTAAAGCAGCTCCATCCGAACATGCATAAATGA
AA sequence Show only first row Show all	>Lus10007463 pacid=23176473 polypeptide=Lus10007463 locus=Lus10007463.g ID=Lus10007463.BGIv1.0 annot-version=v1.0 MSTGELLTIEPLELKFPFELKKQISCSLQLSNQTDSHVAFKVKTTNPKKYCVRPNAGVVLPRSTCDIMVTMQAQKEAPADMQCKDKFLLQSVKAPDGSSA KDITAEMFNKEAGHLVEETKLRVVYVSPPQPPSPVPEGSEEGSSPRGSVSDNGHVNGAEFSVASKAFVQRFDTDDKSPEAKALITKLTEEKNSAVQLNNK LRQELLGIATNQDRFMIFDAKRISYVLVEISGNVEARGEQKQRRGVADVRDHCGFTGHIDGIPLEEDVKQLHPNMHK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60600		(AT)VAP, (AT)VA...	VAMP/SYNAPTOBREVIN-ASSOCIATED ...		Lus10007463 [exp]	0	1
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10027940 [exp]	3.9	0.8971
AT1G69523			S-adenosyl-L-methionine-depend...		Lus10037162 [exp]	6.9	0.8869
AT1G30110		ATNUDX25	nudix hydrolase homolog 25 (.1...		Lus10003714 [exp]	7.9	0.8943
AT1G44170		ALDH4, ALDH3H1	aldehyde dehydrogenase 4, alde...		Lus10025681 [exp]	10.8	0.8949
AT1G10650			SBP (S-ribonuclease binding pr...		Lus10030597 [exp]	11.7	0.8786
					Lus10034460 [exp]	13.9	0.8680
AT4G31860			Protein phosphatase 2C family ...		Lus10042416 [exp]	14.8	0.8769
AT1G10650			SBP (S-ribonuclease binding pr...		Lus10030599 [exp]	17.7	0.8728
AT1G07630		PLL5	pol-like 5 (.1)		Lus10025348 [exp]	20.0	0.8725
AT4G26550			Got1/Sft2-like vescicle transp...		Lus10027128 [exp]	22.3	0.8530

Compare expression of checked genes

Lus10007463 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.