Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16563 492 / 2e-171 Eukaryotic aspartyl protease family protein (.1) AT5G45120 226 / 5e-68 Eukaryotic aspartyl protease family protein (.1) AT3G52500 167 / 4e-46 Eukaryotic aspartyl protease family protein (.1) AT3G18490 131 / 4e-33 Eukaryotic aspartyl protease family protein (.1) AT3G25700 124 / 6e-31 Eukaryotic aspartyl protease family protein (.1.2) AT2G03200 119 / 5e-29 Eukaryotic aspartyl protease family protein (.1) AT1G01300 114 / 4e-27 Eukaryotic aspartyl protease family protein (.1) AT1G09750 105 / 2e-24 Eukaryotic aspartyl protease family protein (.1) AT3G61820 105 / 4e-24 Eukaryotic aspartyl protease family protein (.1) AT2G42980 102 / 6e-23 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028941 [exp] 809 / 0 AT4G16563 489 / 2e-169 Eukaryotic aspartyl protease family protein (.1) Lus10000725 [exp] 595 / 0 AT4G16563 508 / 2e-177 Eukaryotic aspartyl protease family protein (.1) Lus10008513 [exp] 586 / 0 AT4G16563 493 / 7e-172 Eukaryotic aspartyl protease family protein (.1) Lus10004204 [exp] 178 / 4e-50 AT3G52500 457 / 2e-158 Eukaryotic aspartyl protease family protein (.1) Lus10029408 [exp] 175 / 4e-49 AT3G52500 466 / 5e-162 Eukaryotic aspartyl protease family protein (.1) Lus10018286 [exp] 173 / 7e-48 AT5G45120 520 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10003999 [exp] 127 / 1e-31 AT1G01300 636 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10021293 [exp] 120 / 6e-30 AT3G52500 369 / 1e-125 Eukaryotic aspartyl protease family protein (.1) Lus10025702 [exp] 120 / 7e-29 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G158600 [exp] 602 / 0 AT4G16563 494 / 5e-172 Eukaryotic aspartyl protease family protein (.1) Potri.003G076300 [exp] 595 / 0 AT4G16563 484 / 2e-168 Eukaryotic aspartyl protease family protein (.1) Potri.012G118000 [exp] 215 / 5e-64 AT5G45120 575 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.015G113100 [exp] 205 / 3e-60 AT5G45120 588 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.009G162400 [exp] 195 / 1e-56 AT3G52500 396 / 1e-134 Eukaryotic aspartyl protease family protein (.1) Potri.006G204700 [exp] 192 / 2e-55 AT3G52500 504 / 5e-177 Eukaryotic aspartyl protease family protein (.1) Potri.016G071900 [exp] 174 / 8e-49 AT3G52500 491 / 8e-172 Eukaryotic aspartyl protease family protein (.1) Potri.001G306200 [exp] 122 / 2e-30 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1) Potri.019G002100 [exp] 119 / 5e-29 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.002G171700 [exp] 116 / 9e-28 AT1G01300 642 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10007466 pacid=23176496 polypeptide=Lus10007466 locus=Lus10007466.g ID=Lus10007466.BGIv1.0 annot-version=v1.0 ATGGCAAAGCCAATCCTTTCCTCTGTTTTCTTCCTCCTCTGTTTTCTTCATCATCACCTCTGTTTTTCCTCCTCGCAACTGCTCCTCCCTTTAACCCATT CCCTCTCCACTTCCCACTTCACCTCCACCCACCACCTCCTAAAATCCACCTCTTCCCGCTCCGCCGCCCGCTTCCGCCGCCACCACCACCGCCAACGTCA TCAACAAGTCTCCCTTCCCCTGTCTCCCGGCAGCGACTACACCCTCTCCATCACCCTCAGCTCCAATCCTCCCCGCCACGTGTCGCTCTACCTCGACACC GGCAGCGACCTTGTCTGGTTCCCTTGCCACCCCTTCGAATGCATCCTCTGCGAAGGCAAGTCCGAAAACCAATCGTTAACCGTCCCCGTAAATCTTACTT CCTCTTCCGCAGCAGCCTTCGTCCCCTGCAAATCGGCGGCTTGCTCCGCCGCCCATTCCAATCACCCGACTTCCGACCTATGCGCGATCGCCAAGTGTCC GTTGGACATGATCGAGACTTCCGATTGTCAGTCTTTTTCCTGCCCTCCTTTCTACTACGCCTACGGCGACGGAAGCCTCGTCGCTCGCCTTTATACCGAC GCCGTCAAGCTGCCGTTAGCTACTCCGTCTCTGGATATTAAGAATTTCACGTTCGGTTGCGCTCATACTGCTTTAGCCGAACCGGTTGGTGTGGCCGGGT TTGGACCGGGAGTCTTGTCTTTGCCTGTACAGCTCGCTGCTGATTCGCCTCAACTCGGGAATCGGTTCTCTTACTGTTTGGTTTCTCATTCGTTCGACTC GGACAAGGTTCGTCACCCGAGTCCGTTGATTCTCGGCCAGTTGGACGATAAGCGGAAACGGGTCGGTACTGAACCAGTACCGACCCGGTATATGTACACT TCGTTGATCGACAACCCGAAACATCCGTACTTCTACACGGTTGGGTTGGAAGGAATTTCGGTTGGGAAGAGGAATATTCCTGCGCCGGATTTCTTACAGG TAGTCGACGGCGAAGGAATGGGAGGATTGGTGGTGGATTCAGGGACGACTTTCACTATGCTGCCCGCAGGTTTGTACAATTCAGTGGTTTCCGAGTTTGA GAAGTGGGTCGGGCGGGTTTATGAGCGGGCTAATCAGATCGAGTCGAACACTGGGCTGAGCCCATGCTATTATTACAACGACGTCGTAGCGAAGGTGCCG AGGTTGGTGCTGCATTTCTCCGGGAACGGATCCAGTGTGGAGTTGCCTAGGAAGAACTATTTTTACGAGTTTGTGGACGGTCGAGAAGGCGGGAGGAAGA AGAGGAAGGTCGGGTGCTTGATGCTGATGAACGGCGGAGATGAGGAGGAGTTGAGCGGTGGGCCAGCAGGCACGTTGGGGAATTACCAGCAGCAAGGGTT TGAGGTGGTTTATGATTTGGAGAAGAAGAGGGTCGGCTTTGGTAGGAGAGAGTGCGCATCTTTGTGGGAAAGCTTGAACCAAGGATAA
AA sequence Show only first row Show all	>Lus10007466 pacid=23176496 polypeptide=Lus10007466 locus=Lus10007466.g ID=Lus10007466.BGIv1.0 annot-version=v1.0 MAKPILSSVFFLLCFLHHHLCFSSSQLLLPLTHSLSTSHFTSTHHLLKSTSSRSAARFRRHHHRQRHQQVSLPLSPGSDYTLSITLSSNPPRHVSLYLDT GSDLVWFPCHPFECILCEGKSENQSLTVPVNLTSSSAAAFVPCKSAACSAAHSNHPTSDLCAIAKCPLDMIETSDCQSFSCPPFYYAYGDGSLVARLYTD AVKLPLATPSLDIKNFTFGCAHTALAEPVGVAGFGPGVLSLPVQLAADSPQLGNRFSYCLVSHSFDSDKVRHPSPLILGQLDDKRKRVGTEPVPTRYMYT SLIDNPKHPYFYTVGLEGISVGKRNIPAPDFLQVVDGEGMGGLVVDSGTTFTMLPAGLYNSVVSEFEKWVGRVYERANQIESNTGLSPCYYYNDVVAKVP RLVLHFSGNGSSVELPRKNYFYEFVDGREGGRKKRKVGCLMLMNGGDEEELSGGPAGTLGNYQQQGFEVVYDLEKKRVGFGRRECASLWESLNQG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16563			Eukaryotic aspartyl protease f...		Lus10007466 [exp]	0	1
AT2G24520		AHA5	H\(+\)-ATPase 5, H\(+\)-ATPase...		Lus10026946 [exp]	2.8	0.8896
AT1G79860		ATROPGEF12, ROP...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10037866 [exp]	7.6	0.9073
AT4G16563			Eukaryotic aspartyl protease f...		Lus10028941 [exp]	8.2	0.8335
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10008212 [exp]	9.7	0.9016
AT5G39130			RmlC-like cupins superfamily p...		Lus10003267 [exp]	11.6	0.8909
AT5G47070			Protein kinase superfamily pro...		Lus10040135 [exp]	11.8	0.8035
AT1G51340			MATE efflux family protein (.1...		Lus10016412 [exp]	11.9	0.8678
AT5G13080	WRKY	ATWRKY75, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10012547 [exp]	12.8	0.7765
AT5G38200			Class I glutamine amidotransfe...		Lus10009152 [exp]	14.0	0.8612
AT3G06880			Transducin/WD40 repeat-like su...		Lus10023666 [exp]	14.3	0.8302

Compare expression of checked genes

Lus10007466 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.