Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01110 789 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G05670 334 / 7e-104 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT5G39710 327 / 3e-101 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22470 310 / 5e-96 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 307 / 3e-95 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G12620 304 / 9e-94 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G59900 311 / 2e-93 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12300 298 / 2e-91 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G55840 308 / 3e-91 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12775 298 / 4e-91 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028943 [exp] 486 / 9e-170 AT5G01110 299 / 2e-97 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 335 / 7e-104 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039056 [exp] 335 / 1e-103 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027916 [exp] 333 / 3e-103 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013283 [exp] 327 / 4e-102 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10012068 [exp] 335 / 1e-101 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036020 [exp] 313 / 5e-95 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000364 [exp] 310 / 1e-94 AT1G22960 619 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10034616 [exp] 303 / 7e-92 AT1G22960 617 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G276500 [exp] 942 / 0 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G105600 [exp] 350 / 6e-110 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G105700 [exp] 338 / 3e-104 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G046000 [exp] 332 / 2e-103 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G236800 [exp] 337 / 3e-103 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G147700 [exp] 328 / 2e-102 AT2G15630 736 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G032600 [exp] 327 / 3e-102 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.015G105400 [exp] 337 / 4e-102 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G035700 [exp] 323 / 2e-99 AT1G05670 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.010G217600 [exp] 322 / 8e-99 AT2G16880 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10007468 pacid=23176488 polypeptide=Lus10007468 locus=Lus10007468.g ID=Lus10007468.BGIv1.0 annot-version=v1.0 ATGGCTACCCTTCAACGGTTGGGTTTTCAGAAACTTCTTGTCCCGCGAATTGGCGGTGGAAGACTCGCTTTTGCCACCACTGCTTTCGGTTCCAGCTTTG TAAATGCCGATCAAGATGGTCTTCCATCCATGTCATTGCCTGATTCTTTCCTTGTAGAGAAAATCATACGGGATTTGAAGCTATGGAAGGTAAATTCGTT GCAAACCCATCACTCCCGCTTGAACCCACATATCGTACTTGAAGTTCTATCTCGTTGTCGAGACAATTTGGCACTGGGACAGAAATTTGTTGATTCTGTT CTGTCCAGTGGAAGCAGTTTTAAGCATTCGTCGTTGTCATTGAGTGCGATGATTCACGTTTTGGTCCGTAGTAGGAGATTATCAGATGCACAAGTTTTGG TGCTTAGAATGGTTAGGAGAAGTGGGGTTACAAGGATTGAGGTTGTTGAGTCTTTGGTGTCAGCTGGTGCTCATAGCTCGCCAAATGATGGAGTGTTTGA TTTGTTGATTAGGACTTACGTCCAAGCTAGGAAATTGAGGGAAGGGACAGAGGCATTTAGGATCTTGAGAAGTAAAGGATTGGCGATTCCCATAAATGCT TGTAATAGTCTTCTTGGAGGGTTAGTGAAGACTGGTTGGGTGGATTTGGCTTGGGAAGTTTTCGGTCAAGTTCTTACCAGCGGTATTGATTTGAATGTCT ATACACTCAATATTATGGTGAATGCTTTGTGTAAGGATCACAAGGTTGATCAAGTTGGGTCGTTCCTATCCGATATGGAGGCCAAAGGTATTTTCGCTGA TGATGTGACGTTTAATACTCTAATCAGCGCACATTGCCGCGAAGGACATGTTGATCAGGCTTTGCATGTCATGGAGTTAATGTCTAGTAAAGGTTTCAAA GCAACTCGTCTTACATACAACTGTATTATGAACGGTTACTGTAAAATAGGGAAATATAAAAGGGCGAAGGGTGTTCTGGACAAATTATTGCTGGATGGGT ACAGTCCTGATGCAGCTAGTTATAATACATTGCTTGTTGAGAGCTGTAGAAATAATGATTATACTGAAGCTGAGGAACTTTTTAGTGAAATGCTGAACCG AAGTGTTGCTCCTGATATGATCAGCTTCACTTCCCTCATTGGAGCTCTATCAAGAAAGGGGCGTCTCGATAGAGCGCTTATGTATTTCGAGAGAATGCAG AAATCTGGTTTTGTTCCTGATAATGTGATCTACACTATTCTTATAGATGGGCATTGTAGAAATGGTATGATGACTGAGGCAATGAAGATTCGGGATGTAA TGCTTCAGAAGGGTTGTATTTTGGATGTGATAACATACAATACTATATTGAACGGATTATGCAAGGAGAAGATGCTCACAGATGCTGATAATTTGCTGGA CGAGATGATGGAGAGAGGTGTGTTCCCTGACTTCTACACTTACACCACTCTTATCAACGGACACTGTAAAAATGGAGATTTGAACAAGGCTCAGAGCTTG TTTGAGACGATGAAGTTGAAACATATAAAAGCAGACATTGTGACATACAATGCATTAATCGATGGATTTTGCAAAATTGGTGAAATGGAGAAAGCGAATC AGCTATGGCATGACATGATTTCTAGAAAGATGCTTCCGAATCACATTTCGTATGGCACTCTGATAAATGGATATTGCAGTTTAGGTAGTGTATCTGAGGC CTTCAGGTTATTGGATGAGATGATTGAAAGGGGTATTAGACCCAGTCTTGTTACATGTAACACAGTTATAAAGGGTTATTGCCGGTCAGGCGATGCTTCG AAAGCAGTTGAGTTCTTGGATAAGATGATTGCAAAAGAAATTTTTCCAGACAATATCACATACAACACCCTCATTTCTAGTTTTATGAGAGGAGGAAATA TGGACAAAGCATTGTCATTGGTGAATGAGATGGAAAGCCAAGGGTTGTTGCTGAATATTGTCACTTATAATGCAATCCTGAATGGGTTCTGTAGTCTAGG CAGAATGCAAGATGCTGAATCGGTGCTCCGGAAAATGATTGAGAAGGGCGTATATCCGGATAGATCCACATACACAGCTCTTATAAATGGACATGTCAGC CAGGAGAACTTAAAGGAGGCATTTCGATTCCATGATGAAATGTTACTTAGAGGGTTTGTACCAGATGACGATACTTGA
AA sequence Show only first row Show all	>Lus10007468 pacid=23176488 polypeptide=Lus10007468 locus=Lus10007468.g ID=Lus10007468.BGIv1.0 annot-version=v1.0 MATLQRLGFQKLLVPRIGGGRLAFATTAFGSSFVNADQDGLPSMSLPDSFLVEKIIRDLKLWKVNSLQTHHSRLNPHIVLEVLSRCRDNLALGQKFVDSV LSSGSSFKHSSLSLSAMIHVLVRSRRLSDAQVLVLRMVRRSGVTRIEVVESLVSAGAHSSPNDGVFDLLIRTYVQARKLREGTEAFRILRSKGLAIPINA CNSLLGGLVKTGWVDLAWEVFGQVLTSGIDLNVYTLNIMVNALCKDHKVDQVGSFLSDMEAKGIFADDVTFNTLISAHCREGHVDQALHVMELMSSKGFK ATRLTYNCIMNGYCKIGKYKRAKGVLDKLLLDGYSPDAASYNTLLVESCRNNDYTEAEELFSEMLNRSVAPDMISFTSLIGALSRKGRLDRALMYFERMQ KSGFVPDNVIYTILIDGHCRNGMMTEAMKIRDVMLQKGCILDVITYNTILNGLCKEKMLTDADNLLDEMMERGVFPDFYTYTTLINGHCKNGDLNKAQSL FETMKLKHIKADIVTYNALIDGFCKIGEMEKANQLWHDMISRKMLPNHISYGTLINGYCSLGSVSEAFRLLDEMIERGIRPSLVTCNTVIKGYCRSGDAS KAVEFLDKMIAKEIFPDNITYNTLISSFMRGGNMDKALSLVNEMESQGLLLNIVTYNAILNGFCSLGRMQDAESVLRKMIEKGVYPDRSTYTALINGHVS QENLKEAFRFHDEMLLRGFVPDDDT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01110			Tetratricopeptide repeat (TPR)...		Lus10007468 [exp]	0	1
AT3G13682		LDL2	LSD1-like2 (.1)		Lus10038587 [exp]	4.0	0.8647
AT3G52250	MYB		Duplicated homeodomain-like su...		Lus10036515 [exp]	4.0	0.8888
AT5G04670			Enhancer of polycomb-like tran...		Lus10008985 [exp]	4.9	0.8626
AT5G14950		GMII, ATGMII	golgi alpha-mannosidase II (.1...		Lus10039457 [exp]	7.1	0.8602
AT1G65070			DNA mismatch repair protein Mu...		Lus10025647 [exp]	9.2	0.8468
AT5G15280			Pentatricopeptide repeat (PPR)...		Lus10033008 [exp]	10.5	0.8311
AT4G13970			zinc ion binding (.1)		Lus10003970 [exp]	14.6	0.8635
AT3G14470			NB-ARC domain-containing disea...		Lus10039540 [exp]	22.2	0.8054
AT4G14050			Pentatricopeptide repeat (PPR)...		Lus10040634 [exp]	25.7	0.8030
AT2G46915			Protein of unknown function (D...		Lus10007214 [exp]	26.6	0.8153

Compare expression of checked genes

Lus10007468 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.