Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09500 251 / 5e-87 Ribosomal protein S19 family protein (.1) AT5G09490 247 / 2e-85 Ribosomal protein S19 family protein (.1) AT5G09510 241 / 3e-83 Ribosomal protein S19 family protein (.1.2) AT1G04270 241 / 4e-83 RPS15 cytosolic ribosomal protein S15 (.1.2) AT5G43640 222 / 1e-75 Ribosomal protein S19 family protein (.1) AT5G63070 186 / 3e-61 Ribosomal protein S19 family protein (.1) AT1G33850 66 / 6e-15 Ribosomal protein S19 family protein (.1) ATCG00820 44 / 2e-06 ATCG00820.1, RPS19 ribosomal protein S19 (.1) AT5G47320 39 / 0.0006 RPS19 ribosomal protein S19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018777 [exp] 267 / 2e-93 AT5G09510 266 / 3e-93 Ribosomal protein S19 family protein (.1.2) Lus10033856 [exp] 265 / 1e-92 AT5G09510 265 / 9e-93 Ribosomal protein S19 family protein (.1.2) Lus10026127 [exp] 257 / 2e-89 AT5G09500 244 / 4e-84 Ribosomal protein S19 family protein (.1) Lus10041168 [exp] 259 / 1e-88 AT5G09510 260 / 6e-89 Ribosomal protein S19 family protein (.1.2) Lus10021886 [exp] 242 / 7e-81 AT5G09500 244 / 1e-81 Ribosomal protein S19 family protein (.1) Lus10024865 [exp] 227 / 5e-78 AT5G09500 222 / 4e-76 Ribosomal protein S19 family protein (.1) Lus10008692 [exp] 172 / 3e-56 AT5G09490 162 / 2e-52 Ribosomal protein S19 family protein (.1) Lus10027711 [exp] 42 / 2e-05 AT5G47320 123 / 3e-36 ribosomal protein S19 (.1) Lus10003009 [exp] 42 / 0.0001 AT5G47040 1420 / 0.0 lon protease 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G043200 [exp] 271 / 6e-95 AT5G09500 266 / 5e-93 Ribosomal protein S19 family protein (.1) Potri.005G219700 [exp] 265 / 2e-92 AT5G09500 266 / 6e-93 Ribosomal protein S19 family protein (.1) Potri.010G076900 [exp] 263 / 7e-92 AT5G09510 267 / 2e-93 Ribosomal protein S19 family protein (.1.2) Potri.008G161901 [exp] 128 / 1e-39 AT5G09510 130 / 4e-41 Ribosomal protein S19 family protein (.1.2) Potri.005G055401 [exp] 90 / 3e-24 AT1G04270 97 / 3e-27 cytosolic ribosomal protein S15 (.1.2) Potri.005G055534 [exp] 71 / 2e-16 AT1G04270 77 / 1e-18 cytosolic ribosomal protein S15 (.1.2) Potri.003G123750 [exp] 67 / 1e-15 AT1G04270 67 / 4e-16 cytosolic ribosomal protein S15 (.1.2) Potri.004G074201 [exp] 50 / 2e-08 AT5G09500 52 / 1e-09 Ribosomal protein S19 family protein (.1) Potri.013G137688 [exp] 44 / 1e-06 ATCG00820 169 / 1e-56 ribosomal protein S19 (.1) Potri.011G074301 [exp] 44 / 1e-06 ATCG00820 168 / 2e-56 ribosomal protein S19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00203 [flax] [poplar] Ribosomal_S19 Ribosomal protein S19
Representative CDS sequence Show only first row Show all	>Lus10007469 pacid=23176517 polypeptide=Lus10007469 locus=Lus10007469.g ID=Lus10007469.BGIv1.0 annot-version=v1.0 ATGGCGAACGTGGAGGCTCCTCTGGCGGAAGTCGCTGTAGTTCAGAAGAAGAGCAGAACCTTCAAGCAGTTCAGCTACAGGGGAAAGGATCTGGATGCTC TTCTCGACATGTCAACCGACGAGCTCGTTAAGCTATTCCCGGCCAGATCTCGCAGAAGGTTCCAGAGAGGCCTCACCAGGAAGCCCATGGCATTGATCAA GAAGCTCCGCAAGGCCAAGAGGGAGGCTGCTCCAGGCGAGAAGCCGGAGCCGGTGAGGACCCACCTGAGGAACATGATAATAGTGCCTGAGATGATTGGA AGCGTGATCGGGGTTTATAATGGGAAAACGTTCAATCAGATCGAGATCAAGCCGGAGATGATCGGGCATTACCTGGCCGAGTTTTCGATATCGTACAAGC CTGTCAGGCACGGGAAACCTGGTGTCGGAGCTACTCATTCTTCGAGATTCATCCCTCTCAAGTGA
AA sequence Show only first row Show all	>Lus10007469 pacid=23176517 polypeptide=Lus10007469 locus=Lus10007469.g ID=Lus10007469.BGIv1.0 annot-version=v1.0 MANVEAPLAEVAVVQKKSRTFKQFSYRGKDLDALLDMSTDELVKLFPARSRRRFQRGLTRKPMALIKKLRKAKREAAPGEKPEPVRTHLRNMIIVPEMIG SVIGVYNGKTFNQIEIKPEMIGHYLAEFSISYKPVRHGKPGVGATHSSRFIPLK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09500			Ribosomal protein S19 family p...		Lus10007469 [exp]	0	1
AT5G61710			unknown protein		Lus10025039 [exp]	7.5	0.6414
					Lus10017966 [exp]	10.9	0.7687
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10027394 [exp]	19.3	0.7666
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10026685 [exp]	23.0	0.6793
AT2G21540		ATSFH3	SEC14-like 3 (.1.2.3)		Lus10042303 [exp]	29.1	0.7260
AT5G08350			GRAM domain-containing protein...		Lus10017373 [exp]	36.0	0.7197
AT3G25220		FKBP15-1	FK506-binding protein 15 kD-1 ...		Lus10002339 [exp]	41.1	0.6944
AT5G47060			Protein of unknown function (D...		Lus10019494 [exp]	47.1	0.7111
AT3G48180			unknown protein		Lus10030823 [exp]	48.0	0.6517
					Lus10021979 [exp]	67.0	0.6128

Compare expression of checked genes

Lus10007469 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.