Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17300 804 / 0 ATNS1, NS1, OVA8 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT1G70980 445 / 4e-150 SYNC3, SYNC1 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT5G56680 425 / 4e-142 SYNC1ARATH, SYNC1, EMB2755 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT3G07420 298 / 2e-92 ATNS2, SYNC2_ARATH, NS2 SYNTHETASE C2, asparaginyl-tRNA synthetase 2 (.1) AT1G68420 91 / 5e-22 Class II aaRS and biotin synthetases superfamily protein (.1) AT4G26870 96 / 1e-20 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT4G31180 83 / 2e-16 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) AT4G33760 45 / 0.0001 tRNA synthetase class II (D, K and N) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028945 [exp] 778 / 0 AT4G17300 740 / 0.0 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Lus10032704 [exp] 420 / 3e-140 AT5G56680 907 / 0.0 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Lus10012920 [exp] 355 / 1e-115 AT5G56680 799 / 0.0 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Lus10038228 [exp] 239 / 2e-73 AT3G07420 353 / 7e-118 SYNTHETASE C2, asparaginyl-tRNA synthetase 2 (.1) Lus10025874 [exp] 244 / 1e-71 AT3G07420 604 / 0.0 SYNTHETASE C2, asparaginyl-tRNA synthetase 2 (.1) Lus10008180 [exp] 165 / 2e-47 AT5G56680 268 / 2e-87 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Lus10018862 [exp] 99 / 2e-21 AT4G31180 667 / 0.0 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) Lus10028555 [exp] 96 / 5e-21 AT4G31180 606 / 0.0 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) Lus10028557 [exp] 57 / 2e-09 AT4G31180 235 / 8e-76 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G129800 [exp] 880 / 0 AT4G17300 872 / 0.0 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Potri.017G028800 [exp] 869 / 0 AT4G17300 888 / 0.0 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Potri.006G153900 [exp] 445 / 4e-150 AT5G56680 929 / 0.0 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Potri.018G070000 [exp] 409 / 3e-136 AT5G56680 931 / 0.0 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Potri.002G249700 [exp] 293 / 1e-89 AT3G07420 654 / 0.0 SYNTHETASE C2, asparaginyl-tRNA synthetase 2 (.1) Potri.006G085400 [exp] 83 / 2e-16 AT4G31180 709 / 0.0 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0040 [flax] [poplar] tRNA_synt_II PF00152 [flax] [poplar] tRNA-synt_2 tRNA synthetases class II (D, K and N)
Representative CDS sequence Show only first row Show all	>Lus10007470 pacid=23176480 polypeptide=Lus10007470 locus=Lus10007470.g ID=Lus10007470.BGIv1.0 annot-version=v1.0 ATGGCAGCCGCCGCCGCATTTGCGCCGGCCACCACTTCTCTTCGGCTAGGCTCATACTCAACTCTACGCTTCCTCAAATCAAGCCCTAGGTTCCTTCGGT TATCTCCACACCCCTATTCTTTCCCGCCAAAAATCCAATTCCACCGTTTGCCCCATCCGTTCTCTGCCGCGGAGCCACGTGGGAGGCTCTTCTGCAGCCT GATTTCCGGAGCCCTTCAGCAGTCCGGGGAAAGGGTTACCGCCGAAGATGTGGAACAGCCGGCGGGAGGATTGGGGAACAGAGTTGGGGAGTTCAGGAAG AAACTGAAGGTTGCCGATGTGAAAGGCGGGCCTAAAGAAGGCTTGGAGCGAGTTGGTCAGACCGTGGTTGTTATGGGTTGGGTCAAGACACTTCGGTTGC AGAGCAGCGTTACGTTCATGGAGGTCAATGATGGTTCGTGCTTGTCGAGCATGCAATGTGTATTGGACCCACAAGTTGAAGGCTACGATCAGGTAGAATC TGGTGTTATAGTTACTGGTGTATCAGTAACTGTACAAGGAACTATAGTAGAGAGCCAAGGGTCGAAGCAAAAGGTTGAATTGAAGGTCAACAAACTTGTA CTGGTTGGTAAGAGTGATCCATCATATCCAATGCAAAAGAAAAGAGCCACCAGAGAGTTTTTGAGAACTAAAGCTCATCTTCGCCCCCGAACGAATACAT TCAGTGCGGTTGCCCGAGTTAGGAATGCTTTAGCATATGCTACCCACAAGTTCTTTCAAGAAAATGGCTTTGTTTGGGTCTCAAGTCCAATTATCACTGC CTCAGATTGTGAAGGAGCAGGCGAACAGTTCTGTGTTACTACATTGATTCCAGGCTCTCAAGAAGTGAGTAAATCACATGTAGATGGCATTCCTAAAACG AAGGATGGATTGATTGATTGGTCACAAGACTTTTTCGGGAAACCGGCCTTCTTGACTGTCTCCGGCCAGCTCAATGCTGAAACATATGCTACTGCTCTTT CAGATGTATATACATTTGGCCCAACATTTCGTGCAGAAAACTCCAACACGTCTAGACACCTGGCAGAGTTTTGGATGATTGAACCAGAACTAGCATTTGC AGATTTGGATGATGATATGGCCTGTGCCACTGCCTATCTCCAGTATGTAGTGAGGCACATCCTAGACAATTGTAAGGAAGACATGGAATTTTTCAATACT TGGATCGAGAAGGGGATCATTGATCGCTTAATTAACGTGGCTGAGAAGGAATTTGTGCAGTTGACTTACACTGATGCAGTTGAACTACTTCTCAAAACAA ATAAGAAGTTCGAATTCCCGGTGGCATGGGGATGTGATTTGCAGAGTGAGCATGAGCGGTACATAACCGAAGAAGCATTTGGTGGATGCCCTGTCATAAT TCGAGACTATCCCAAGGCACTTCCTTCACTTCTTTTCTTTGCTTTAAGATTTGGAAAAATGCATTTTGAGATTAAGGCTTTTTATATGCGCCAGAATGAT GACGGCAAAACGGTTGCTGCCATGGATCTGTTAGTTCCTCGGGTAATTGCTCACTACTCTACTAGAACGATGTCTGACGAAAACCGTAATGAACCTCCAC GTCAGCTGCTGCTAGTGGCGACTGCCGTTGGGGAGCTGATGGGGGGAAGTCAAAGAGAAGAACGGCTTGATTATCTGGAAAATCGTTTGGACGAGTTGAA GCTTAATAAGGAGAGCTACTGGTGGTACCTTGATTTGCGACGTTATGGTTCAGTTCCTCATGCTGGATTCGGGGCTGGGTTCGAAAGGCTGGTGCAGTTT GCAACTGGATTAGAGAATATTAAAGATACAATACCGTTTCCTCGGACCCCTGGCTCGGCTGAGTTTTGA
AA sequence Show only first row Show all	>Lus10007470 pacid=23176480 polypeptide=Lus10007470 locus=Lus10007470.g ID=Lus10007470.BGIv1.0 annot-version=v1.0 MAAAAAFAPATTSLRLGSYSTLRFLKSSPRFLRLSPHPYSFPPKIQFHRLPHPFSAAEPRGRLFCSLISGALQQSGERVTAEDVEQPAGGLGNRVGEFRK KLKVADVKGGPKEGLERVGQTVVVMGWVKTLRLQSSVTFMEVNDGSCLSSMQCVLDPQVEGYDQVESGVIVTGVSVTVQGTIVESQGSKQKVELKVNKLV LVGKSDPSYPMQKKRATREFLRTKAHLRPRTNTFSAVARVRNALAYATHKFFQENGFVWVSSPIITASDCEGAGEQFCVTTLIPGSQEVSKSHVDGIPKT KDGLIDWSQDFFGKPAFLTVSGQLNAETYATALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLDDDMACATAYLQYVVRHILDNCKEDMEFFNT WIEKGIIDRLINVAEKEFVQLTYTDAVELLLKTNKKFEFPVAWGCDLQSEHERYITEEAFGGCPVIIRDYPKALPSLLFFALRFGKMHFEIKAFYMRQND DGKTVAAMDLLVPRVIAHYSTRTMSDENRNEPPRQLLLVATAVGELMGGSQREERLDYLENRLDELKLNKESYWWYLDLRRYGSVPHAGFGAGFERLVQF ATGLENIKDTIPFPRTPGSAEF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17300		ATNS1, NS1, OVA...	ovule abortion 8, Class II ami...		Lus10007470 [exp]	0	1
AT3G15020		mMDH2	mitochondrial malate dehydroge...		Lus10038323 [exp]	1.7	0.7969
AT4G33480			unknown protein		Lus10003851 [exp]	3.7	0.7936
AT4G17300		ATNS1, NS1, OVA...	ovule abortion 8, Class II ami...		Lus10028945 [exp]	6.0	0.7594
AT4G30950		FADC, SFD4, FAD...	STEAROYL DESATURASE DEFICIENCY...		Lus10035831 [exp]	7.5	0.7783
AT5G51820		STF1, PGM1, ATP...	STARCH-FREE 1, ARABIDOPSIS THA...		Lus10031669 [exp]	10.4	0.7839
AT5G43940		PAR2, ATGSNOR1,...	PARAQUAT RESISTANT 2, sensitiv...		Lus10022853 [exp]	15.9	0.7392
AT5G62810		ATPEX14, PED2, ...	PEROXISOME DEFECTIVE 2, peroxi...		Lus10002377 [exp]	16.6	0.6735
AT2G44870			unknown protein		Lus10020395 [exp]	17.2	0.7501
AT1G24490		ALB4, ARTEMIS	ARABIDOPSIS THALIANA ENVELOPE ...		Lus10011398 [exp]	18.8	0.6759
AT1G31800		CYP97A3, LUT5	LUTEIN DEFICIENT 5, "cytochrom...		Lus10020380 [exp]	23.0	0.7020

Compare expression of checked genes

Lus10007470 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.