Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47480 731 / 0 RGPR-related (.1) AT5G47490 714 / 0 RGPR-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028946 [exp] 1627 / 0 AT5G47490 1196 / 0.0 RGPR-related (.1) Lus10008520 [exp] 1134 / 0 AT5G47490 1143 / 0.0 RGPR-related (.1) Lus10004721 [exp] 1106 / 0 AT5G47490 1141 / 0.0 RGPR-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G157800 [exp] 1023 / 0 AT5G47490 1114 / 0.0 RGPR-related (.1) Potri.003G077100 [exp] 966 / 0 AT5G47490 1033 / 0.0 RGPR-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007471 pacid=23176469 polypeptide=Lus10007471 locus=Lus10007471.g ID=Lus10007471.BGIv1.0 annot-version=v1.0 ATGGAGGATCAAATCGACGATGATTTCTTCGACAAATTGGTCGATGATGATTTTGGCCCCACCATTTCTGGCACCGGCCACGACAAATTGACGGAGGGGA GTGATTCCGATGAGGCCAAGGCTTTTGCTAACCTGAGCATGGAGGATGTCACCGGTGGCGATGCTGGAGCTGAGGTCAGAGATGAAAAGATTTCTTCTGT GGGTGATAGTTCAGGGTTTTCTGGGGCTTCAGCAGAAGTTAGTGATGCATTGAACTTGTCTGGATCATCTGGGTCTGCTAATGCAGTGGACTTGAGTACT GATGGATTAAAATCAGAGATAACTACTGAGTCAGCTCCAGTTACTGACATCGGATCCACAAAGCTTGGGGCTAAGGTGGTGGATTGGGGTTCTCTGTATG CTGATTCAGCTTCGAATGGAAAGCATGAGTTTGGTTCGTATGATTTTTTCAGCGAGTTGGGAGGTAATTCTGATGGTTCTCCCCAAAAAGTTGACGGAAC CACCAATGTAGAAGATAGTGCAGGTGGGAAATTGGAGAATACGGTTAACTATGAGGCATATCAAGAAGGTATACAGAGTCATGGAAGTCATATGCAACAA AATGCAAACGAGCAAGATTCTAGTAGCAGTCAGGACTGGGAAAGTATGTATCCTGGATGGAAATATGATATGAACACTGGGCAATGGTATCAAGTAGACA GTTATGGTGCTACAGCAGCTCCTCAAGAGAGTTATGATTCCAATATAGGGAGTGAATGGGCTGCTGCATCTGATCGGAAGGGAGAGGTTAATTTCTTCCA GCAGGGCTCTCAGTCTGTGGCTGGAACCATCGCCGAGGCCAGTGCAACTGAGAGTGTGTCTGCCTGGAATCGGGTATCGCAGGAAAGTAACAATGGTTAC CCGGAACATATGATTTTTGACCCTCAATATCCTGGTTGGTATTATGACACAATCGCACAAGAATGGCGTTCATTTGAGAGCTATGCTTCATCAGTACAGC AGGTGATTCCCCAAACTCTTGAGCAACACAATCAAAATGGGAATGGTTCACACAATACGTATTCACAGAATGGCAGTGATGTATATGGGGAATTTGCGCA AGCTGAGAAGCATGGCTCACATGGTTACGCTAGCCAAGGACAAGAAATTAGCAGGGGTGAGTCACATGGAAGTTACAACCAGAGTGATCTGTCTATGTGG CAAGCAGAAAGTGCTCCCAAGAATGATTTTAGTCCAGATTATGGTCAAAATCAGCAGGTGCAGAACTCCTATGGCTCAAATGCTTTGATGGGCAATCATT TTGATAATCACAAGTCCTTTAATACCATGGGAACTGTTCCCTCAGATGACAAATTGAGGCAGGGCCATTCTGAGGGCAATGGGTTTCTGGGCTCACAAAA TTTTGTCCAGGGTGGCAACTTCAATCAACAGTTTAATCAGGGAAATGTGAAGACCGAGCCGATGTATTTTTCGAATGATTTATATAGCAGTACAAAACCA ATGAATTTTACAGATCAATCATATCAGAATAGTCAGCACTATTCTTATGCTCCAACTACTGGAAGATCTTCTGCTGGCCGTCCTCCACATGCACTGGTCT CTTTTGGGTTTGGTGGAAAGCTTTTAATAATGAAAGATGATAGCCTTGCAAACTCTTCATTTGGCACCCAGGCTGCTGTCGGAGGCTCAGTTTCTCTCAT GAATTTAATGGAGGTTATTTCTGGAAGTAGTATAGACAGTGATTCCACCGCTAGAGGCGCATCCTGCAATTATTTCCTTCCTCTCTGCCAACAGTCTTTT CCTGGTCCACTGGTGGGGGGAAATGCTGGGAGTAAAGATTTGAATAAGTGGATTGATGAGAGGATTGCTAACTGTGAGTCTGCTGATATGGATTATAGAA AAGGCGAAGTATTGAAACTTCTCCTTTCATTGCTGAAAATAGCATGTAAACATTATGGCAAACTTCGGTCTCCTTTTGGGTCGGACACATCTTTGAAGGA AAGTGATACACCAGAATCAGCAGTTGCAAAACTGTTTTCATCTGCCAAGAAAAATTTCAGCGAGTATGGTGGTCTTAGCCACTGTTTGCAGACTTTGCCA TCTGAAACACAACTTCAGGCAACTGCTTCTGAGGTACAAAATCTTCTGGTTTCTGGTAGAAAACTAGAAGCTTTACAATTTGCACAGGAAGGCCAGTTGT GGGGACTTGCACTTGTGCTTGCATCACAACTTGGACAGCAGTTCTATATTGACACCGTGAAGCAAATGGCACTACGGCAATTGTTGCCTGGATCACCTTT ACGGACGTTGTGCCTTCTCATTGCCGGGCAGCCAGCAGAAGTTTTTTCTTCAGATACCAAATCTGATGGCATTCCACAGCCTTTGCAACCTGGACCAAAT AGCATGCTCGATGACTGGGAACAGAATTTGGCTTTGATAACTGCAAATAGGATAAAAGATGATGAGCTTGTGATTATACATCTTGGGGACTGTCTATGGA AAGATCGTAGTGAGATTACAGCGGCTCATATATGCTATCTAGTTGCAGAAGCTAACTTCGAGACATATTCAGACAGTGCAAGGCTCTGTCTTATTGGTGC AGACCACTGGAAGCATCCTCGTACTTTTGCTAGTCCAGAAGCTATTCAGAGAACTGAACTTTACGAGTACTCGAAGGTGCTAGCACCATCAACATCACAA GGTGTACATAATTATGAGCATGATCAGCAATCGATGGCACCTAGAGTGGCTGCTAGTCAGTCAACAATGGCAATGTCAACATTGGTACCATCTGCTTCCA TGGAACCCATAAGTGAATGGGCTGCCGATGGCAATAGAATGGGAAGACATTCTAGAAGTGTCTCGGAGCCCGACTTCAATCGAACTCCAAGACAGGCTGA TCCCTCGACAGGCGCATCCACGTCCAATTCCCAAGAGAAGACATCAACCTCACCAGGGGTATCTCGCTTGGGTCGTTTTGCTTTTGGATCACAGCTACTT CAGAAGACAGTGGACCTAGTGTTACGACCCCGTTCAGATAAGCAGGCAAAGCTAGGTGAGAAGAACAAATTTTACTATGATGAAAAGCTTAAAAGATGGG TTGAAGAAGGTGTAGATCCCCCAGCTGAGGAAGCTGCCCCGCCACCTCCACCAACTACTGCCTTCTTTCAGAATGGAGCATCTGACTACAACTTAAAATC TGCTCTAAAGAATGAGGGTTCCCCTCCCAGTGGGAGCCCCAAATTCCGGAGTCCAGCTACACAAGAACATAGTTCTGGAATTCCACCGATGCCTACTGGC GGAAATCAATTTTCAGCCCGTGGGCGGATGGGCGTTCGAGCAAGATATGTGGACACTTTCAACCAAGGTGGTGGAAAGGCAGCAAATTTATTCCATTCAC CGCCTTTGCCGTCTGCTAAACCGGTTGCTCCTATGAACCCCAAGTTTTTTGTCCCTGCACCTGCGCCTTCCGCTGATTATCTTACCGGAACTGCAGTAGA GAATGTGGAAGACAACTTTGCAGCTAGTGAAATTCCTCCGGCAACTTCCATGGACCATAATTCTTTCCAGCCAACGGCAACCTCCATGAACAATTCATTC CAGCCTCCGGCATCTTCGTCGCCAATGGTAGTGCAAAGGTTCCCCAGTCTGGATAACATTCAGAGAGGTAGAGTCGGCCTGAATAACAATGGCGGTGCAA ACTCTCAATCCCGACGTACAGCATCGTGGAGTGGGAGTTTCCATTCCTCGTTCAGCCCGCCGAGGACTGCAGAGAACCCCCAACCCTCCTCATTTGGCAT GCCGGGTACATCTTTTATGCCCGTCGAGCCGCCTGCCATGACTCGTGTGCCTACAAGTGGCAGTAGCTTTGGTGACCTTCAGGAAGTGGAACTTTGA
AA sequence Show only first row Show all	>Lus10007471 pacid=23176469 polypeptide=Lus10007471 locus=Lus10007471.g ID=Lus10007471.BGIv1.0 annot-version=v1.0 MEDQIDDDFFDKLVDDDFGPTISGTGHDKLTEGSDSDEAKAFANLSMEDVTGGDAGAEVRDEKISSVGDSSGFSGASAEVSDALNLSGSSGSANAVDLST DGLKSEITTESAPVTDIGSTKLGAKVVDWGSLYADSASNGKHEFGSYDFFSELGGNSDGSPQKVDGTTNVEDSAGGKLENTVNYEAYQEGIQSHGSHMQQ NANEQDSSSSQDWESMYPGWKYDMNTGQWYQVDSYGATAAPQESYDSNIGSEWAAASDRKGEVNFFQQGSQSVAGTIAEASATESVSAWNRVSQESNNGY PEHMIFDPQYPGWYYDTIAQEWRSFESYASSVQQVIPQTLEQHNQNGNGSHNTYSQNGSDVYGEFAQAEKHGSHGYASQGQEISRGESHGSYNQSDLSMW QAESAPKNDFSPDYGQNQQVQNSYGSNALMGNHFDNHKSFNTMGTVPSDDKLRQGHSEGNGFLGSQNFVQGGNFNQQFNQGNVKTEPMYFSNDLYSSTKP MNFTDQSYQNSQHYSYAPTTGRSSAGRPPHALVSFGFGGKLLIMKDDSLANSSFGTQAAVGGSVSLMNLMEVISGSSIDSDSTARGASCNYFLPLCQQSF PGPLVGGNAGSKDLNKWIDERIANCESADMDYRKGEVLKLLLSLLKIACKHYGKLRSPFGSDTSLKESDTPESAVAKLFSSAKKNFSEYGGLSHCLQTLP SETQLQATASEVQNLLVSGRKLEALQFAQEGQLWGLALVLASQLGQQFYIDTVKQMALRQLLPGSPLRTLCLLIAGQPAEVFSSDTKSDGIPQPLQPGPN SMLDDWEQNLALITANRIKDDELVIIHLGDCLWKDRSEITAAHICYLVAEANFETYSDSARLCLIGADHWKHPRTFASPEAIQRTELYEYSKVLAPSTSQ GVHNYEHDQQSMAPRVAASQSTMAMSTLVPSASMEPISEWAADGNRMGRHSRSVSEPDFNRTPRQADPSTGASTSNSQEKTSTSPGVSRLGRFAFGSQLL QKTVDLVLRPRSDKQAKLGEKNKFYYDEKLKRWVEEGVDPPAEEAAPPPPPTTAFFQNGASDYNLKSALKNEGSPPSGSPKFRSPATQEHSSGIPPMPTG GNQFSARGRMGVRARYVDTFNQGGGKAANLFHSPPLPSAKPVAPMNPKFFVPAPAPSADYLTGTAVENVEDNFAASEIPPATSMDHNSFQPTATSMNNSF QPPASSSPMVVQRFPSLDNIQRGRVGLNNNGGANSQSRRTASWSGSFHSSFSPPRTAENPQPSSFGMPGTSFMPVEPPAMTRVPTSGSSFGDLQEVEL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47490			RGPR-related (.1)		Lus10007471 [exp]	0	1
AT5G47490			RGPR-related (.1)		Lus10028946 [exp]	1.0	0.9901
AT5G54200			Transducin/WD40 repeat-like su...		Lus10039934 [exp]	1.7	0.9520
AT5G01730		ATSCAR4, WAVE3	SCAR family protein 4 (.1)		Lus10029437 [exp]	3.0	0.9440
AT1G31780			unknown protein		Lus10037281 [exp]	3.5	0.9478
AT1G55860		UPL1	ubiquitin-protein ligase 1 (.1...		Lus10032589 [exp]	4.2	0.9675
AT4G38200			SEC7-like guanine nucleotide e...		Lus10022983 [exp]	4.5	0.9515
AT1G65580		FRA3	FRAGILE FIBER3, Endonuclease/e...		Lus10024113 [exp]	6.0	0.9312
AT5G04480			UDP-Glycosyltransferase superf...		Lus10028829 [exp]	6.1	0.9209
AT5G07740			actin binding (.1)		Lus10015724 [exp]	6.9	0.9324
AT4G19490		ATVPS54	ARABIDOPSIS THALIANA VPS54 HOM...		Lus10038410 [exp]	7.5	0.9456

Compare expression of checked genes

Lus10007471 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.