Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028950 [exp] 190 / 3e-55 AT5G56930 143 / 2e-35 embryo defective 1789, CCCH-type zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007473 pacid=23176465 polypeptide=Lus10007473 locus=Lus10007473.g ID=Lus10007473.BGIv1.0 annot-version=v1.0 ATGGAGCAGCAGCAGCTGCAGTTGGTTGAAATGCCTGACGCTTTTAATCCTCGTCGTAAACCACTTCTCAAGAGTGAAACCTACTTTTCACTGCTGCGGC TCTTGTCCTTCTGTGACAACCAACTTCGTCCACTGGAGGTCAAACCAGGTAGCAATAGCGGCGATGAACCTGAACGGAAGGCTTGCGTTCAAGTGGGCGG TAGTGATGGTGATTGCCTAGCTCAAAAGAGTAAGGCTCATGATCAAACTTTTGAATGTTTGGGTCAGAGAGGGTTTAGCGAAACAAAGGTGAAAGCAGGG CAGTTAGTGAGCAAACGATTCATGAAGAAGGTACAGGGAATGAAGTTAGATGGGAAGCAATTATCTGGTCGTGTTATTGATGGAACTGGATGTCGTAAGC AATCCGCCTCTAATACTACTGCCGGAAATCGGTATCCTTCTTACTCAAGAACTGAGACAAACAAGGATGATCGCTGTTTCACTTCCTCTGCCACTGATGG AGTTGGTAATCTTAATAATGGAGTAGGAAACAAAGACAAGATCAACATTCCAATGGTGTCTAATCGCAAAACTGTTGTATACGATGATCTTCTATTTACT GAAGGCTCTGAGGTGTCGCAGGAAGGAAAGAAAGGGGAAAGGGCCAAGGGCCAACAGATCAATTCTGAGACTGCAAGAAGAAACAATAACAACAGAGGCG GAGAGGTTGGGAAAGTCAAAGATACCAAATTGGAATTACAGTGA
AA sequence Show only first row Show all	>Lus10007473 pacid=23176465 polypeptide=Lus10007473 locus=Lus10007473.g ID=Lus10007473.BGIv1.0 annot-version=v1.0 MEQQQLQLVEMPDAFNPRRKPLLKSETYFSLLRLLSFCDNQLRPLEVKPGSNSGDEPERKACVQVGGSDGDCLAQKSKAHDQTFECLGQRGFSETKVKAG QLVSKRFMKKVQGMKLDGKQLSGRVIDGTGCRKQSASNTTAGNRYPSYSRTETNKDDRCFTSSATDGVGNLNNGVGNKDKINIPMVSNRKTVVYDDLLFT EGSEVSQEGKKGERAKGQQINSETARRNNNNRGGEVGKVKDTKLELQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10007473 [exp]	0	1
AT5G20990		B73, CNX1, SIR4...	SIRTINOL 4, CO-FACTOR FOR NITR...		Lus10000717 [exp]	2.2	0.8264
AT5G14610			DEAD box RNA helicase family p...		Lus10035149 [exp]	10.6	0.7504
					Lus10029656 [exp]	14.1	0.7817
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Lus10003436 [exp]	16.2	0.7624
AT4G21870			HSP20-like chaperones superfam...		Lus10018346 [exp]	29.3	0.7149
AT4G23900			Nucleoside diphosphate kinase ...		Lus10001824 [exp]	30.6	0.7463
AT3G23020			Tetratricopeptide repeat (TPR)...		Lus10041172 [exp]	30.7	0.7541
					Lus10008005 [exp]	37.1	0.7075
					Lus10003883 [exp]	40.2	0.7380
AT2G26695			Ran BP2/NZF zinc finger-like s...		Lus10033023 [exp]	50.0	0.6956

Compare expression of checked genes

Lus10007473 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.