Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45120 62 / 1e-10 C2H2ZnF C2H2-like zinc finger protein (.1) AT3G60580 56 / 7e-09 C2H2ZnF C2H2-like zinc finger protein (.1) AT4G16610 53 / 4e-08 C2H2ZnF C2H2-like zinc finger protein (.1) AT1G02030 53 / 9e-08 C2H2ZnF C2H2-like zinc finger protein (.1) AT1G26590 47 / 1e-05 C2H2ZnF C2H2-like zinc finger protein (.1) AT1G26610 47 / 1e-05 C2H2ZnF C2H2-like zinc finger protein (.1) AT5G67450 42 / 0.0002 C2H2ZnF AZF1 zinc-finger protein 1 (.1) AT3G49930 42 / 0.0004 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT2G37430 40 / 0.0005 C2H2ZnF ZAT11 C2H2 and C2HC zinc fingers superfamily protein (.1) AT3G19580 41 / 0.0007 C2H2ZnF AZF2 zinc-finger protein 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028951 [exp] 370 / 4e-128 AT3G60580 117 / 1e-30 C2H2-like zinc finger protein (.1) Lus10004724 [exp] 147 / 9e-42 AT3G60580 108 / 2e-27 C2H2-like zinc finger protein (.1) Lus10008523 [exp] 140 / 4e-39 AT3G60580 107 / 3e-27 C2H2-like zinc finger protein (.1) Lus10015740 [exp] 59 / 2e-09 AT1G02030 104 / 3e-25 C2H2-like zinc finger protein (.1) Lus10021637 [exp] 56 / 2e-08 AT1G02030 99 / 8e-23 C2H2-like zinc finger protein (.1) Lus10003463 [exp] 55 / 4e-08 AT1G26610 112 / 2e-28 C2H2-like zinc finger protein (.1) Lus10000679 [exp] 55 / 4e-08 AT2G45120 91 / 3e-20 C2H2-like zinc finger protein (.1) Lus10036890 [exp] 49 / 6e-07 AT1G26610 82 / 5e-19 C2H2-like zinc finger protein (.1) Lus10037095 [exp] 49 / 5e-06 AT1G26610 229 / 6e-70 C2H2-like zinc finger protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G157700 [exp] 157 / 4e-45 AT3G60580 159 / 2e-46 C2H2-like zinc finger protein (.1) Potri.003G077200 [exp] 156 / 7e-45 AT3G60580 151 / 2e-43 C2H2-like zinc finger protein (.1) Potri.002G143800 [exp] 116 / 2e-29 AT3G60580 199 / 1e-61 C2H2-like zinc finger protein (.1) Potri.014G066100 [exp] 86 / 1e-18 AT3G60580 176 / 1e-52 C2H2-like zinc finger protein (.1) Potri.001G125900 [exp] 54 / 7e-08 AT3G60580 98 / 1e-23 C2H2-like zinc finger protein (.1) Potri.008G094500 [exp] 49 / 2e-06 AT1G26610 223 / 3e-67 C2H2-like zinc finger protein (.1) Potri.010G159600 [exp] 49 / 4e-06 AT1G26610 298 / 6e-96 C2H2-like zinc finger protein (.1) Potri.017G091800 [exp] 45 / 4e-05 AT5G67450 77 / 9e-16 zinc-finger protein 1 (.1) Potri.004G118100 [exp] 42 / 0.0004 AT3G49930 80 / 9e-17 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.002G143600 [exp] 42 / 0.0005 AT1G02040 124 / 1e-31 C2H2-type zinc finger family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007474 pacid=23176493 polypeptide=Lus10007474 locus=Lus10007474.g ID=Lus10007474.BGIv1.0 annot-version=v1.0 ATGGATGGTACTAGCAGGCAAAAATGCAAGCTCTGTTTCAGAGCCTTCCCTAACGGCAGAGCTTTAAGCGGCCACATGAAATCTCACAGCTTCCTCCACC CTACATTTCCTCTCCTTCCTCCCCGTCGTAACCAACTCGGTCACGACCCGGACGCCACTGAGTCGTCTTCTTCTTCCTCATATTCCTCATCGGAAGAAGA AACAGAGCTGAAATTGCAGAGTATTGTCAAGAGCGACGACGTCGTTTACGGGCTGAGGGAGAATCCGCGGAAGAGCTTCCGGGTCGCGGATCCCGAGTTC TCCTTCGCCGGATCGTCGTCCCTCGTCCAGGACAGGGAGAGCGAGTCTGCTGAGTCGAGGAAACCGGCCACCGGGAGGCGATCCAAGCGGACCTGCCGGA AACCATGGGGGAATTCGGATTCGCCGGTGAGCTCGGTCTCCTCCGATGCGGACGAGGACGTGGCGATGTGTCTTGTGATGCTGTCGAGGGATGTGAATAA CTGGAGGAGGATGAAGAAGCAAAGATTCAACAACAATGTCGACGTGGGTTTCGAAGATTTGAAACAAAACGGTGGAGAAATCGACAAGGAAGAAGAGGAG GAAGAAGTTCACGAGATGCGCGGGATTTGCGGGAAGAAGAAGAAGCTGAAATGCGAGAAATGTATGAAACAGTTCCGATCTCCAAAAGCGTTGATTTCCC ACCGTCGGATTTGCTTCCTTATCAACTACAAAGGTCATCATCATCAGCTCCGGAAACTCCAAGAGGAGGAGAGGATTTTCCAATGCCCGTATTGCTTCAA GGTGTTCGGGTCGGGTCAAGCACTGGGCGGCCACAAGAGATCCCATCTCTCCTCCCGCACCGGTTCTTACCCATCAGCGGTGGATCCTCTTCCTCCTCCT CCTCCTTCGCCTTCGCCGCCGACTTGCAGTTTCTGGGATCTGAACTTGCCGGCAGCGGCGGAAGAGGACGATGAGGAGTTCAGTGTAGTTTACGATGCAT AA
AA sequence Show only first row Show all	>Lus10007474 pacid=23176493 polypeptide=Lus10007474 locus=Lus10007474.g ID=Lus10007474.BGIv1.0 annot-version=v1.0 MDGTSRQKCKLCFRAFPNGRALSGHMKSHSFLHPTFPLLPPRRNQLGHDPDATESSSSSSYSSSEEETELKLQSIVKSDDVVYGLRENPRKSFRVADPEF SFAGSSSLVQDRESESAESRKPATGRRSKRTCRKPWGNSDSPVSSVSSDADEDVAMCLVMLSRDVNNWRRMKKQRFNNNVDVGFEDLKQNGGEIDKEEEE EEVHEMRGICGKKKKLKCEKCMKQFRSPKALISHRRICFLINYKGHHHQLRKLQEEERIFQCPYCFKVFGSGQALGGHKRSHLSSRTGSYPSAVDPLPPP PPSPSPPTCSFWDLNLPAAAEEDDEEFSVVYDA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10007474 [exp]	0	1
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10028951 [exp]	1.0	0.9418
AT3G14920			Peptide-N4-(N-acetyl-beta-gluc...		Lus10017926 [exp]	1.7	0.9246
AT5G59510		RTFL5, DVL18	DEVIL 18, ROTUNDIFOLIA like 5 ...		Lus10040784 [exp]	6.9	0.8769
AT3G57880			Calcium-dependent lipid-bindin...		Lus10016280 [exp]	7.2	0.9262
AT2G16640		ATTOC132, TOC13...	multimeric translocon complex ...		Lus10034170 [exp]	10.8	0.8565
AT3G28420			Putative membrane lipoprotein ...		Lus10005837 [exp]	11.2	0.8800
AT4G13950		RALFL31	ralf-like 31 (.1)		Lus10022561 [exp]	14.7	0.8714
AT1G71830		ATSERK1, SERK1	somatic embryogenesis receptor...		Lus10028716 [exp]	15.5	0.8997
AT5G06710	HD	HAT14	homeobox from Arabidopsis thal...		Lus10016254 [exp]	17.5	0.8794
AT4G11950			Protein of unknown function (D...		Lus10024479 [exp]	18.0	0.9011

Compare expression of checked genes

Lus10007474 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.