Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47470 449 / 1e-158 Nodulin MtN21 /EamA-like transporter family protein (.1) AT4G16620 316 / 2e-106 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G18200 146 / 2e-40 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT5G13670 145 / 3e-40 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G30420 145 / 4e-40 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G39510 143 / 3e-39 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G53210 142 / 3e-39 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G37460 142 / 7e-39 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G21890 140 / 3e-38 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G75500 139 / 7e-38 WAT1 Walls Are Thin 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028952 [exp] 680 / 0 AT5G47470 449 / 1e-158 Nodulin MtN21 /EamA-like transporter family protein (.1) Lus10004725 [exp] 540 / 0 AT5G47470 430 / 3e-151 Nodulin MtN21 /EamA-like transporter family protein (.1) Lus10000330 [exp] 539 / 0 AT5G47470 429 / 1e-150 Nodulin MtN21 /EamA-like transporter family protein (.1) Lus10040311 [exp] 149 / 1e-41 AT2G39510 482 / 2e-171 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10023432 [exp] 149 / 2e-41 AT2G39510 480 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10005965 [exp] 141 / 2e-38 AT2G39510 465 / 2e-164 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10024424 [exp] 140 / 7e-38 AT2G37460 486 / 2e-172 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10029465 [exp] 139 / 1e-37 AT2G39510 456 / 1e-160 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008708 [exp] 137 / 6e-37 AT5G07050 552 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G157600 [exp] 474 / 1e-168 AT5G47470 442 / 6e-156 Nodulin MtN21 /EamA-like transporter family protein (.1) Potri.003G077300 [exp] 466 / 1e-165 AT5G47470 431 / 1e-151 Nodulin MtN21 /EamA-like transporter family protein (.1) Potri.010G209200 [exp] 150 / 4e-42 AT2G39510 503 / 3e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G233600 [exp] 150 / 5e-42 AT1G75500 584 / 0.0 Walls Are Thin 1 (.1.2) Potri.015G073200 [exp] 148 / 2e-41 AT5G40240 254 / 4e-82 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.018G099500 [exp] 146 / 2e-40 AT4G30420 402 / 7e-140 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G082700 [exp] 143 / 1e-39 AT2G37460 488 / 4e-174 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G177600 [exp] 143 / 2e-39 AT4G30420 375 / 4e-129 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.008G051500 [exp] 143 / 2e-39 AT2G39510 472 / 4e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.015G042900 [exp] 142 / 3e-39 AT3G18200 476 / 4e-169 nodulin MtN21 /EamA-like transporter family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10007475 pacid=23176498 polypeptide=Lus10007475 locus=Lus10007475.g ID=Lus10007475.BGIv1.0 annot-version=v1.0 ATGGTTATGAAGAAGGATAATGTATTGGAAGAAATAGGGATCGTGGGAGGGCTGATATCGGTGCAATTCGTGTACGCTGGGAATTCGATTCTGCTGAGCT ATTTGATGTCTGTCGGCCTAACTCCTCTCACCATTGTCATCTTCTCCACTTTCGCCACCTTCCTCGTCGTCTCCCCTTTTGCTTTCTGTTTCGAAAGGAA GAGATGGCCGACCAGATTCAGTTTCAAGTTTGTAACCCAGCTGCTTCTCATTTCCTTTGGAGGAGTTACACTGTTCCAATCTTTATTCCTGAAGGGAATT AAGCTGACTTCTCCTGCTCTGGCAACAGCCATGCCTAACCTTGCCCCTGCCTTCATTTTCATCATTGCTTGGACACTTGGGCTAGAGAGAATAAGATTTG GGTGCATATACAGCAAGATCAAGATCATTGGCACACTGTTGTGTGTCGTTGGTGCCTTGACAATGAGCCTCATGCACAGCAGATCCATCAAAAACGATGC TTCATTAATCTCTTCCCCGACCACCGACCACGTAATCGAAAAAATCGACAAGGAGAAGCTCGTCGGCTGCTTGTACCTCATGGCCGCCGTCTTTGTCCTC TCTAGCAACGTCGTCCTGCAGGCGACCACATTGGGCGATTTTCCGGCACCGATGTCGCTATGTGCCATAACATCGTTGATTGGTGTGGTGATAACTGCAA TGGTGCAGCTACTCCAGGGCCAAACGACGTCGGATATCTTCTTCCCGCTCGTGGATGTTGGCGATCTCATTGCCTATTCTTTACTGGGAGGTGCGGTGGG AGGAGCATGTGTGAGCTTCAATGGGTGGGCAATGAAGAAGAGAGGTCCAGTACTTGTGTCAATGTTCAGCCCCATCGGAACAGTTATCTCAGTTGTTCTG TCGGTCATCACATTAGGGGAGACCATTGACGTAGGGAGCCTTTGCGGAATGTTGCTGATGTTCACGGGACTGTACTTGTTCTTGTGGGGGAAAGGGAAAG AAGGATACTCAGATGATCCATTGCAAAGCAGTGAGTTCGATCCACAGAAGCCTCTCCTAAGCTAA
AA sequence Show only first row Show all	>Lus10007475 pacid=23176498 polypeptide=Lus10007475 locus=Lus10007475.g ID=Lus10007475.BGIv1.0 annot-version=v1.0 MVMKKDNVLEEIGIVGGLISVQFVYAGNSILLSYLMSVGLTPLTIVIFSTFATFLVVSPFAFCFERKRWPTRFSFKFVTQLLLISFGGVTLFQSLFLKGI KLTSPALATAMPNLAPAFIFIIAWTLGLERIRFGCIYSKIKIIGTLLCVVGALTMSLMHSRSIKNDASLISSPTTDHVIEKIDKEKLVGCLYLMAAVFVL SSNVVLQATTLGDFPAPMSLCAITSLIGVVITAMVQLLQGQTTSDIFFPLVDVGDLIAYSLLGGAVGGACVSFNGWAMKKRGPVLVSMFSPIGTVISVVL SVITLGETIDVGSLCGMLLMFTGLYLFLWGKGKEGYSDDPLQSSEFDPQKPLLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47470			Nodulin MtN21 /EamA-like trans...		Lus10007475 [exp]	0	1

Compare expression of checked genes

Lus10007475 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.