Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47460 187 / 1e-55 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G16835 147 / 3e-40 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02750 142 / 2e-38 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G03880 137 / 1e-36 REME1 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G27610 137 / 1e-36 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G37380 137 / 1e-36 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53360 135 / 4e-36 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G20230 135 / 4e-36 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G24000 135 / 7e-36 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G33170 135 / 1e-35 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028953 [exp] 392 / 7e-135 AT5G47460 541 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014956 [exp] 143 / 4e-40 AT5G13230 484 / 1e-165 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020918 [exp] 142 / 8e-39 AT2G29760 474 / 3e-159 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010998 [exp] 142 / 2e-38 AT4G16835 778 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040577 [exp] 138 / 2e-38 AT1G25360 577 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030908 [exp] 141 / 6e-38 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10009269 [exp] 140 / 6e-38 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030053 [exp] 140 / 8e-38 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022702 [exp] 139 / 9e-38 AT3G11460 641 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G136200 [exp] 141 / 5e-38 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.003G081700 [exp] 140 / 9e-38 AT4G16835 852 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G121400 [exp] 137 / 4e-37 AT1G13410 561 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G217900 [exp] 138 / 5e-37 AT2G22410 530 / 0.0 SLOW GROWTH 1 (.1) Potri.005G006400 [exp] 138 / 5e-37 AT1G56690 993 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G155100 [exp] 138 / 5e-37 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G086100 [exp] 137 / 6e-37 AT5G15300 675 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 138 / 9e-37 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G164900 [exp] 137 / 1e-36 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G111300 [exp] 136 / 4e-36 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10007476 pacid=23176511 polypeptide=Lus10007476 locus=Lus10007476.g ID=Lus10007476.BGIv1.0 annot-version=v1.0 ATGGCGGTGAAATCTCGAGGACGAGGAGTAGCCTCCGAGTTGGCCACCGAGTTGTTTTATGGATTTGAACCATTTGGACCCTGTTTCCGAACCGGTTTGC CAAAAGCGATTACTCGTATGTTTTACGGCTGCGTTGAGATGGGGAACGGTTATCCACTATTGCATCGTAAGACGTGGTCTCTCAACAAGAGTGGTTGTCG GGAGTTCTATGATTACATGTACGCTAAATGCGGTGAAGTTAGTAACGCTGATTCGATATTCCGATCGTTGCCACATAAGAATTTGGTTACGTGGAACGCG ATCATAGCAGGATACGCTCAGGGCGGGGATTCGGAAAAGGTGATACAATTGTTTGAGGAGTTGAAGAAGGCGAAGGGTCTGCATCCCGATTGGATCACAT ATCTAAACGTGTTAGCTTCATGCTCGAACGCTAGAGTGCCACTCGAGACAGCAACTCGATATTTCGAATCGATGATCAACGATCACGGAATCATACCATC CCCCGAGCACTGCTGTTCGATGATTCGTCTCCTGGGACAAAATGGAGAGGTTCGTTCTACTTTGAGGATGATTTACGACTTTAGATTCGAGTCGTGCGGA GTGGTTTGGAGGGCGTTGCTTGGAGCTTGCGGAACATGTGCGAATTCGCGGGTTGCTAAGATTGCAGCTGCAAAAGTGATTGAACTGGAAGGTGACGATG ATTATGTTTATGTAATGCTGTCCAGTATTTTTGCATCTTGTGGCAAATGGGGAGATGTAAAGAAGGCGAGGAATCTCATGTGA
AA sequence Show only first row Show all	>Lus10007476 pacid=23176511 polypeptide=Lus10007476 locus=Lus10007476.g ID=Lus10007476.BGIv1.0 annot-version=v1.0 MAVKSRGRGVASELATELFYGFEPFGPCFRTGLPKAITRMFYGCVEMGNGYPLLHRKTWSLNKSGCREFYDYMYAKCGEVSNADSIFRSLPHKNLVTWNA IIAGYAQGGDSEKVIQLFEELKKAKGLHPDWITYLNVLASCSNARVPLETATRYFESMINDHGIIPSPEHCCSMIRLLGQNGEVRSTLRMIYDFRFESCG VVWRALLGACGTCANSRVAKIAAAKVIELEGDDDYVYVMLSSIFASCGKWGDVKKARNLM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47460			Pentatricopeptide repeat (PPR)...		Lus10007476 [exp]	0	1
AT5G59600			Tetratricopeptide repeat (TPR)...		Lus10016511 [exp]	4.1	0.7862
AT2G43770			Transducin/WD40 repeat-like su...		Lus10002211 [exp]	5.5	0.7743
AT5G47460			Pentatricopeptide repeat (PPR)...		Lus10028953 [exp]	9.2	0.7521
AT1G13410			Tetratricopeptide repeat (TPR)...		Lus10021068 [exp]	11.5	0.7592
AT5G08305			Pentatricopeptide repeat (PPR)...		Lus10010183 [exp]	18.7	0.7276
AT1G07780		TRP6, PAI1	TRANSIENT RECEPTOR POTENTIAL 6...		Lus10028971 [exp]	19.2	0.7243
AT1G13410			Tetratricopeptide repeat (TPR)...		Lus10021069 [exp]	22.4	0.7400
AT3G05640			Protein phosphatase 2C family ...		Lus10020671 [exp]	23.2	0.7129
AT3G46790		CRR2	CHLORORESPIRATORY REDUCTION 2,...		Lus10001557 [exp]	24.0	0.6822
AT2G41080			Tetratricopeptide repeat (TPR)...		Lus10003324 [exp]	31.5	0.7210

Compare expression of checked genes

Lus10007476 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.