Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16640 330 / 2e-111 Matrixin family protein (.1) AT2G45040 308 / 3e-103 Matrixin family protein (.1) AT1G70170 255 / 4e-82 MMP matrix metalloproteinase (.1) AT1G59970 242 / 3e-77 Matrixin family protein (.1) AT1G24140 240 / 4e-76 Matrixin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028955 [exp] 612 / 0 AT4G16640 360 / 3e-123 Matrixin family protein (.1) Lus10004728 [exp] 435 / 1e-152 AT4G16640 350 / 2e-119 Matrixin family protein (.1) Lus10030662 [exp] 259 / 2e-83 AT1G59970 338 / 9e-115 Matrixin family protein (.1) Lus10028180 [exp] 248 / 1e-80 AT2G45040 278 / 9e-93 Matrixin family protein (.1) Lus10010719 [exp] 199 / 4e-61 AT1G70170 305 / 3e-102 matrix metalloproteinase (.1) Lus10039464 [exp] 188 / 4e-57 AT1G24140 224 / 3e-71 Matrixin family protein (.1) Lus10005605 [exp] 186 / 3e-56 AT1G24140 223 / 9e-71 Matrixin family protein (.1) Lus10014512 [exp] 178 / 3e-53 AT1G59970 221 / 6e-70 Matrixin family protein (.1) Lus10032175 [exp] 173 / 5e-51 AT1G59970 224 / 3e-71 Matrixin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G157500 [exp] 394 / 1e-136 AT2G45040 349 / 2e-119 Matrixin family protein (.1) Potri.003G077400 [exp] 393 / 6e-135 AT2G45040 330 / 1e-110 Matrixin family protein (.1) Potri.014G058200 [exp] 343 / 9e-117 AT2G45040 358 / 3e-123 Matrixin family protein (.1) Potri.015G103900 [exp] 293 / 4e-97 AT1G24140 381 / 3e-131 Matrixin family protein (.1) Potri.012G104600 [exp] 274 / 1e-89 AT1G24140 393 / 5e-136 Matrixin family protein (.1) Potri.013G100400 [exp] 214 / 7e-67 AT1G59970 247 / 4e-80 Matrixin family protein (.1) Potri.008G027600 [exp] 188 / 5e-57 AT1G59970 213 / 8e-67 Matrixin family protein (.1) Potri.013G033200 [exp] 185 / 9e-56 AT1G24140 246 / 2e-79 Matrixin family protein (.1) Potri.019G073800 [exp] 178 / 3e-53 AT1G70170 223 / 1e-70 matrix metalloproteinase (.1) Potri.008G027500 [exp] 172 / 8e-51 AT1G59970 219 / 2e-69 Matrixin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0244 [flax] [poplar] PGBD PF01471 [flax] [poplar] PG_binding_1 Putative peptidoglycan binding domain CL0126 [flax] [poplar] Peptidase_MA PF00413 [flax] [poplar] Peptidase_M10 Matrixin
Representative CDS sequence Show only first row Show all	>Lus10007478 pacid=23176467 polypeptide=Lus10007478 locus=Lus10007478.g ID=Lus10007478.BGIv1.0 annot-version=v1.0 ATGATTCAGTTATTCGGTTATTTCCGTTTCGGCTTCTTCCTCCTCTTCCTCTGCCTTTCCCGCTCTTCCTTATTAGTTCCCGCCAGAATCATACCGGACG GCGTCGTAACTGTCGTAACGGACATCAAGAACAACGCAACCACGTGGCAGAATTTCGTTCGATTGATTGACGCCGGCAAAGGCAGCGAGCTTACTGGAGT CTCCGATCTCAAGCGATACTTCCACCGGTTCGGCTACCTCGACAGTTTGAATAATTCCAACTTCCCCAATTTCACTGATTTGTTCGACGGAGAATTGGAA GCCGCCATCGAAGCATACCAGCGCAACCTCGGATTACACGTCACCAAAAAGTTGGACTCTGACACAGTCAACACCATCATGTCCCCTCGCTGCGGCGTCG GAGACGTTGGAGATATGTCTCCGACGCCGTCGGCGAGTCAGGGGATCCACGCGACGAAGCGATTCGCTTACTTCAACGGCCAGCCGAGGTGGTACCGGCC GGGGGAGCCGATGATACTAACCTACGCCTTCTCGCCAGAGCACACGATCAAGTACATAAGCCTTAGCGAGATAAGGGAGGTGTTCCGGAGGGCGTTCGGG CGGTGGTCGTCGGCGATTCCGGTGAGCTTCCGGGAGGTGGAGGATTACAGGTCGGCAGATATCCGGATCGGGTGGTACAGAGGCGATCACGGCGACGGGG AGGAGTTCGACGGGGTGTTGGGGGTTTTGGCCCACGCGTTCTCGCCGGAGAACGGGAGGCTCCACCTGGACGCGGCGGAGACGTGGGCGGCGGCGGCGGA TTACAAGTCTAACGTGGCGGTGGACTTGGAATCGGTCGCGACGCACGAGATCGGTCATGTGCTGGGGCTGGCCCACAGCTCGGTGAAGGAAGCCGTGATG TACCCGAGTCTGAGCCCGAGGACGAAGAAAGTGGAGCTCAAGGTTGATGACGTGGAAGGTATCCAGGCGCTGTACGGCTCCAACCCGAACTTCAGGTTCG ATACGCTATTGGCTTCGGAGAATTCGACGGATACCGGTGGAGGTGTTCGTCGGCCGGCAGCGGCGGCGTGGACTCATGTCGCCGTCTTGGTGGGCCTTTC CGGCCTGTTGCTCTCATGTATATAA
AA sequence Show only first row Show all	>Lus10007478 pacid=23176467 polypeptide=Lus10007478 locus=Lus10007478.g ID=Lus10007478.BGIv1.0 annot-version=v1.0 MIQLFGYFRFGFFLLFLCLSRSSLLVPARIIPDGVVTVVTDIKNNATTWQNFVRLIDAGKGSELTGVSDLKRYFHRFGYLDSLNNSNFPNFTDLFDGELE AAIEAYQRNLGLHVTKKLDSDTVNTIMSPRCGVGDVGDMSPTPSASQGIHATKRFAYFNGQPRWYRPGEPMILTYAFSPEHTIKYISLSEIREVFRRAFG RWSSAIPVSFREVEDYRSADIRIGWYRGDHGDGEEFDGVLGVLAHAFSPENGRLHLDAAETWAAAADYKSNVAVDLESVATHEIGHVLGLAHSSVKEAVM YPSLSPRTKKVELKVDDVEGIQALYGSNPNFRFDTLLASENSTDTGGGVRRPAAAAWTHVAVLVGLSGLLLSCI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16640			Matrixin family protein (.1)		Lus10007478 [exp]	0	1
AT4G16640			Matrixin family protein (.1)		Lus10028955 [exp]	1.0	0.9600
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10041195 [exp]	3.5	0.9181
AT1G07630		PLL5	pol-like 5 (.1)		Lus10025348 [exp]	5.0	0.9051
AT5G02390		DAU1	DUO1-activated unknown 1, Prot...		Lus10040814 [exp]	5.7	0.9289
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10022102 [exp]	6.9	0.9115
AT2G33460		RIC1	ROP-interactive CRIB motif-con...		Lus10021974 [exp]	7.3	0.9046
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Lus10012059 [exp]	9.9	0.8991
AT1G30110		ATNUDX25	nudix hydrolase homolog 25 (.1...		Lus10003714 [exp]	18.7	0.8909
AT1G07630		PLL5	pol-like 5 (.1)		Lus10024397 [exp]	25.3	0.8759
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10027940 [exp]	25.6	0.8847

Compare expression of checked genes

Lus10007478 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.