Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16650 753 / 0 O-fucosyltransferase family protein (.1) AT1G76270 512 / 5e-177 O-fucosyltransferase family protein (.1) AT4G38390 509 / 3e-176 RHS17 root hair specific 17 (.1) AT1G20550 503 / 1e-173 O-fucosyltransferase family protein (.1) AT1G14970 310 / 2e-98 O-fucosyltransferase family protein (.1) AT2G01480 303 / 7e-96 O-fucosyltransferase family protein (.1) AT2G03280 280 / 4e-88 O-fucosyltransferase family protein (.1.2) AT1G14020 279 / 2e-87 O-fucosyltransferase family protein (.1) AT5G64600 273 / 7e-85 O-fucosyltransferase family protein (.1) AT2G37980 276 / 1e-84 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028957 [exp] 1055 / 0 AT4G16650 771 / 0.0 O-fucosyltransferase family protein (.1) Lus10007792 [exp] 910 / 0 AT4G16650 751 / 0.0 O-fucosyltransferase family protein (.1) Lus10004729 [exp] 898 / 0 AT4G16650 756 / 0.0 O-fucosyltransferase family protein (.1) Lus10013234 [exp] 528 / 0 AT1G76270 791 / 0.0 O-fucosyltransferase family protein (.1) Lus10030754 [exp] 525 / 0 AT1G76270 787 / 0.0 O-fucosyltransferase family protein (.1) Lus10023948 [exp] 511 / 1e-176 AT1G20550 697 / 0.0 O-fucosyltransferase family protein (.1) Lus10012270 [exp] 501 / 1e-172 AT1G76270 758 / 0.0 O-fucosyltransferase family protein (.1) Lus10014444 [exp] 470 / 5e-161 AT1G20550 650 / 0.0 O-fucosyltransferase family protein (.1) Lus10003715 [exp] 305 / 1e-96 AT2G01480 897 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G077500 [exp] 815 / 0 AT4G16650 785 / 0.0 O-fucosyltransferase family protein (.1) Potri.001G157400 [exp] 800 / 0 AT4G16650 773 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G249900 [exp] 531 / 0 AT1G76270 776 / 0.0 O-fucosyltransferase family protein (.1) Potri.004G183200 [exp] 529 / 0 AT1G76270 713 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G011100 [exp] 524 / 0 AT1G76270 759 / 0.0 O-fucosyltransferase family protein (.1) Potri.009G143100 [exp] 523 / 0 AT1G76270 699 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G130600 [exp] 300 / 9e-95 AT2G01480 912 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G111500 [exp] 300 / 2e-94 AT2G01480 906 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G164700 [exp] 282 / 2e-88 AT1G14020 781 / 0.0 O-fucosyltransferase family protein (.1) Potri.017G101300 [exp] 281 / 3e-88 AT5G15740 837 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10007481 pacid=23176481 polypeptide=Lus10007481 locus=Lus10007481.g ID=Lus10007481.BGIv1.0 annot-version=v1.0 ATGGGAGCGGGAGTGGCAAAGGCGTCTAGGTTTAGTTTGATGCCGGCGCAGTCACAGCAACCTAACGGTAAAGTGAGCACCACCGCCTCTGGCGGCGGCG GGGTAGGGAAGATTCAGAGCAGTAGTAATCATCACAGTGAGTGGTGCTGGTGGCGGGGGAGCTGGAGATCGTCCGTGGCGCAAGGGCTGCAGATGCAATG TAGGAAGATCCGGTGGTCGTTAGTCTGCGGTTTGATGCTCTTCGCGCTTGGGATGGTCTCGCTCTTCACAGGACATATGGCGTCTGATCTCGAGTGGTAT TCTCAGCGGCTGGTTAAGCGGACCCTCTACTCCAGATTTAGTGGTATTCGCCGTGAGCCTATTGATATCTGGAAATCCAAGTACTCAAAAATGTTCTATG GATGCAGCGAAAGGGGCCGCAAATATGCTCCTGCTATACCTCAAAAAGTATCCAATGGGTATCTGCTTATAGCAGCAAGTGGAGGACTCAACCAAGAACG AACAGGAATAACAGATGCTGTAGTTGTTGCGAGGTTTCTTAATGCCACACTAGTTGTTCCTGAACTGGATCACCAATCTTATTGGAAAGATGATAGTGAT TTTGTTGATATATTTGACGTTGATTGGTTCATCTCATACCTTGCGAAAGATGTCACCATCGTGAAAAGAGTTCCTGATAAAGTTATGCGATCAATGGATA AGCCTCCATATACAATGCGGGTCCCAAGAAAATCCCCGCCGGAATATTACATGGACCAAGTTCTACCTATATTATCGAGGAGAAAAGTTCTACAATTGAC GAAGTTTGATTATAGGCTTGGATACGAGCTTGATGAAGAATTGCAAAGGTTGCGCTGCCGGGTTAACTATCATGCTCTGAGATTCACAAAGCCAATACGT GAAATTGGCCAAAAGATTGTTATGAAAATGAAGATGATGGCAACACGTTTTATTGCCATTCACTTGAGGTTCGAACCTGATATGCTAGCCTTCTCCGGTT GTTATTTTGGAGGCGGTGACAAAGAGAGATACGAACTCAGTCAAATAAGGAAACGATGGGAAACATTGCCGGACTTGAGTCCTGAAGATGAGAGGGCAAG AGGGAAATGTCCTCTAACTCCTCATGAAGTAGGATTGATGTTGCGTGCATTGGGTTTCGCTAATGACACGTACCTCTTTGTTGCATCTGGAGAAATATAT GGCGGGGAAGAAACTTTACGACCCCTTAAATTGCTATTTCCCAACTTTTACACAAAGGAGATGCTTGCTAATGATGAGTTGAAACCATTCCTTCCTTACT CTTCTCGCTTGGCGGCTATAGACTACATTGTCTGCGACGAGAGTGATGTCTTTGTCACAAACAACAACGGAAATATGGCAAAGATTCTCGCAGGACGAAG GAGGTACGCAGGGCACAAGAGGACCATCCGGCCGAATGCTAAGAAGCTTAGTGCATTGTTCCTGAAAAGACATAAGATGGACTGGGACACCTTCTCCAGA AAGGTAAAATCATATCAGAGAGGGTTCATGGGAGAACCAGATGACCCAAAACCTAGCCGAGGCGAGTTCCATGAACATCCTGCTTCTTGTATCTGCGAGA AACCATTCACTGAGGACGGGAACCTCAAGGAAGACATTGCTTACGCACAAAATCATACTTCTTTTAACCCGAAGAGGCAATGA
AA sequence Show only first row Show all	>Lus10007481 pacid=23176481 polypeptide=Lus10007481 locus=Lus10007481.g ID=Lus10007481.BGIv1.0 annot-version=v1.0 MGAGVAKASRFSLMPAQSQQPNGKVSTTASGGGGVGKIQSSSNHHSEWCWWRGSWRSSVAQGLQMQCRKIRWSLVCGLMLFALGMVSLFTGHMASDLEWY SQRLVKRTLYSRFSGIRREPIDIWKSKYSKMFYGCSERGRKYAPAIPQKVSNGYLLIAASGGLNQERTGITDAVVVARFLNATLVVPELDHQSYWKDDSD FVDIFDVDWFISYLAKDVTIVKRVPDKVMRSMDKPPYTMRVPRKSPPEYYMDQVLPILSRRKVLQLTKFDYRLGYELDEELQRLRCRVNYHALRFTKPIR EIGQKIVMKMKMMATRFIAIHLRFEPDMLAFSGCYFGGGDKERYELSQIRKRWETLPDLSPEDERARGKCPLTPHEVGLMLRALGFANDTYLFVASGEIY GGEETLRPLKLLFPNFYTKEMLANDELKPFLPYSSRLAAIDYIVCDESDVFVTNNNGNMAKILAGRRRYAGHKRTIRPNAKKLSALFLKRHKMDWDTFSR KVKSYQRGFMGEPDDPKPSRGEFHEHPASCICEKPFTEDGNLKEDIAYAQNHTSFNPKRQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16650			O-fucosyltransferase family pr...		Lus10007481 [exp]	0	1
AT4G16650			O-fucosyltransferase family pr...		Lus10028957 [exp]	1.0	0.7786
AT3G52270			Transcription initiation facto...		Lus10040084 [exp]	24.4	0.7548
AT3G02870		VTC4	Inositol monophosphatase famil...		Lus10027343 [exp]	27.7	0.7067
AT3G54880			unknown protein		Lus10037957 [exp]	34.4	0.6315
					Lus10014667 [exp]	65.6	0.6819
AT3G51750			unknown protein		Lus10002202 [exp]	71.5	0.5952
AT1G03080			kinase interacting (KIP1-like)...		Lus10006607 [exp]	72.5	0.6498
AT1G49480	B3	REM19, RTV1	related to vernalization1 1 (....		Lus10021006 [exp]	80.8	0.6723
AT3G20240			Mitochondrial substrate carrie...		Lus10034806 [exp]	106.1	0.6523
AT1G73440			calmodulin-related (.1)		Lus10015884 [exp]	106.8	0.5974

Compare expression of checked genes

Lus10007481 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.