Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028961 [exp] 273 / 2e-89 AT4G12560 81 / 2e-16 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10023370 [exp] 128 / 2e-35 ND 37 / 0.008 Lus10023372 [exp] 127 / 1e-33 AT3G16210 67 / 5e-12 F-box family protein (.1) Lus10015408 [exp] 122 / 2e-31 AT3G16210 64 / 6e-11 F-box family protein (.1) Lus10024677 [exp] 114 / 2e-30 ND 42 / 2e-04 Lus10013988 [exp] 111 / 4e-27 AT3G49180 471 / 4e-160 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) Lus10036360 [exp] 77 / 3e-16 AT4G04690 63 / 1e-11 F-box and associated interaction domains-containing protein (.1) Lus10028962 [exp] 71 / 4e-15 ND / Lus10014935 [exp] 57 / 6e-09 AT3G06240 84 / 2e-17 F-box family protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007485 pacid=23176468 polypeptide=Lus10007485 locus=Lus10007485.g ID=Lus10007485.BGIv1.0 annot-version=v1.0 ATGCCTTCCCCGATATCATTCTATGGAATCCGGCAACCTCCGAAACCAAGTTTCTGCCGCCGCTCCCTCCTCACCGTCCCCGGAAACAGTGATGCTCCGC TTTCACTTGTTCATACTCAGGTTTATAGTTTGAAGAATGATTCGTGGACAACGGTGAATGTCAGTTGTGATTTGAGCTCCGGTGATGCTGATGGATATCC GTTGGGTCTCAAATATGTACATCAGCGGAGGGACACATCTCGAAACGAGAAATGTTATTGGTTCTACAACAAAAGAGTTCCTGACCTCAACGGCATTCTT TCCTTCGACTTGAGCACTGAGGTGTTTGAATCTGTCAACTTCTCGTGCCCCTCTGGACTTCGCAATCTTTACGATCCTGCAGATCTTTTGGATGCCAGAA CAAGGCTTACCCATATTGGAGATGGCAAAACAAGAAGGCTTAACGATTGGCCTTCTGTGTCCTGCTTTATGTTGAAGGAGTCGTTAATCGTCACATTTGG CCCCACGGATTACGAGAACGATGTCGACCCGTATGAGATATGGGGGTTGCTGAAATACCAAGTTGCTGAATCTTGGATAAAACTGTTCACTTTCCAACCA CCAGGGAGAATCTATGTCAATTACTTGGATATTTGGAAAGATGCAACATTTATCTGCTCGCATGAACTGTATAAAGTCACGACTGCTGATCCTGCCGCCA AAGAAGTTGATGGATTTTTCTGCCTTGATCTCTCCACCGAGTCGTCCGCAATCATCTCGAAATTCAAAGCACTGTTCAGCCTTTCGTCGCTCATACTCTT ACTCCAACTCGAGTATCGATCGCTCAACTTAGTGGTATTCAACCCGCATTGA
AA sequence Show only first row Show all	>Lus10007485 pacid=23176468 polypeptide=Lus10007485 locus=Lus10007485.g ID=Lus10007485.BGIv1.0 annot-version=v1.0 MPSPISFYGIRQPPKPSFCRRSLLTVPGNSDAPLSLVHTQVYSLKNDSWTTVNVSCDLSSGDADGYPLGLKYVHQRRDTSRNEKCYWFYNKRVPDLNGIL SFDLSTEVFESVNFSCPSGLRNLYDPADLLDARTRLTHIGDGKTRRLNDWPSVSCFMLKESLIVTFGPTDYENDVDPYEIWGLLKYQVAESWIKLFTFQP PGRIYVNYLDIWKDATFICSHELYKVTTADPAAKEVDGFFCLDLSTESSAIISKFKALFSLSSLILLLQLEYRSLNLVVFNPH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10007485 [exp]	0	1
AT2G37240			Thioredoxin superfamily protei...		Lus10013051 [exp]	1.0	0.9232
AT4G36920	AP2_ERF	FL1, FLO2, AP2	FLORAL MUTANT 2, FLOWER 1, APE...		Lus10004990 [exp]	4.9	0.9148
AT5G10530			Concanavalin A-like lectin pro...		Lus10004279 [exp]	13.9	0.9121
AT5G65495			unknown protein		Lus10002656 [exp]	15.6	0.9141
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10013830 [exp]	16.5	0.9143
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10016467 [exp]	17.1	0.9097
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10016471 [exp]	17.9	0.9133
AT5G59530			2-oxoglutarate (2OG) and Fe(II...		Lus10033875 [exp]	22.4	0.8995
AT1G65820			microsomal glutathione s-trans...		Lus10020793 [exp]	22.4	0.8939
AT3G13620			Amino acid permease family pro...		Lus10013757 [exp]	23.0	0.9020

Compare expression of checked genes

Lus10007485 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.