Plant FIBer expression Database

Lus10007487 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G57460 819 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007798
[exp]
949 / 0 AT5G57460 890 / 0.0 unknown protein
Lus10028963
[exp]
580 / 0 AT5G57460 517 / 5e-180 unknown protein
Lus10004736
[exp]
536 / 0 AT5G57460 538 / 0.0 unknown protein
Lus10000167
[exp]
449 / 4e-156 AT5G57460 358 / 3e-121 unknown protein
Lus10004737
[exp]
208 / 3e-64 AT5G57460 182 / 2e-55 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G168200
[exp]
897 / 0 AT5G57460 860 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Lus10007487 pacid=23176527 polypeptide=Lus10007487 locus=Lus10007487.g ID=Lus10007487.BGIv1.0 annot-version=v1.0
ATGTCCTGCCTCGCTCTGTCCCTTCAACCTTCCAATGGCTCCGACATCTTAATCCAGACCCGGGAATGGTTCCCTCCACCGCGAGCCCTAGTCGCCACCT
CCGCCTTCCGCCTGACCCGATTGGCCTTCGCCGCTACCAAAAACCCGACCCGTAATCAATCTTCCTCATCCGATGAGTATTCCCCTTCCGTGTCTTCCGA
CTCCCTCTCCTCCCTCGGCGACGACCCGCTCGCCGCCTCTAGCGGCCAGCTAATAGTCGGCGTCGAGAGTCAGTACCGCGTGGTCTACCGCCTCGTCAAC
GGGATCTACGTCCTCGGGATCACGATCGCCGACGACCACGACAATTCCGTCAACGTCTTCGAGTGCATCCACGTCGTCAACCAGGCCGTCAGCGTCGTCG
TCGCCGCCTGCCGCGGCGTCGACGTCACGCCGGAGAAGCTGAGCAGGAAATACGCCGAGATCTACATGGCCCTGGACATCGTCCTACGCGGAGTGAGCAG
CATCCGATTGGCAGCAATGCTGGCCTCGATCCACGGCGAGAGCATCGCCAAGATGGTACACTCTGCGCTGGATACGGAGAGCAAGATCCGCGGTGGAGAG
AGCTGGCCGGCCGTGGAAGGTCACGCAATCGAGCGGGAAAGCAACGTGGCAGCTTTCTCCAACGCCGTGTTCGAGCTTCCTCCGGAGACCCTTGCTTCTG
GAGATCACGTGGCGGCGAGTCTTGCACCTGTTGTTTCCGCTGGTGAGCAATTGGATAATAAAAAGGAAGAAAAAGAAGAAGAGAAAGAGGAAACGAAGGA
TCCTTTCGCTGCAAGTGAGGTGGTAAATAAACAGGAGGATTTAGCAGGTGAGTTCAAGAAGGATAAGAGCCAGTCTAAAGATCTGACATTAGCATTAGCC
GGATTGGAAGTTACTGCATTGCCAAATGCAGAAGCTACTAAAGCTACGCATATCAATGTGGAAGGGTTTGAAGGGGATTATGGTGGGATTGAGTTCAACA
ATGAACAAGCTTCATTGGGAGAGACGTTTGAAGGGTTTAGTGAAGCTTGGGGTGGTGGATTGGATGCATCAGAGTTTGTGGGAACGAAGAAGATCCCAAA
GCAGGAAGGACTCAGTGGATTGGAGTTGCTTCAAACAGGTGCTGATCCTGCCGTGGTTGCAAAATCCGCAGCTACTGGAGATGGTACAGGTACCCCTCTT
GACAATCTTCTGGTACAGAAAACTGAGATGAAAGGTCCCGAAATGTACATAGTTGAGGAAGTGAGTGCAGAGTTTAGGGAGTCGCAGCTTGCTCGAGTTG
GATTGATGGGTGTGGTATATTTGAAGACATTGCCGAATAAGAGAGCCGGCGGTGAAGAGACTGAGTTTTCCTTCCGTGTCGATAACACGAAAGCGGTGAA
AAGGTTTGTTATGGATAGTTCGAAAGTTAGTAGCCTTGGTAACGGAATGTTCCACGTCAGGACTGCTGCCTCTGATGAGGCTATACCGATATTCAAGTAC
AGTCTGGTCCCTAGCTTAACTCCATTGCCGTTGAGGGTTCGTCTAGTTCAGCGTCACAGTGGAACCCTCTTCTCCGTAATGATCCAATACGTCTCGAATC
CGGATCTGCCAGTGCCGTTGAGTGATGTAACCTTTGTGTTGAAGTTGCCTGTCGATCCTACATTGTTGACGGTGTCGCCCAAAGCTGCATTGAACAGGTC
TCAGAAGGAGCTGAAATGGGTTGTGCCGGAGATCCCACTGAAGGGCTCTCCAGGTAAGTTGAGGGTGAGGATGCCAGTTGATATCAGTGACGGAGAAGGT
GATGAGGATATAGAGGCTGTTTGTTATGTTAAGTTCTCCATGGAAGGAGCTACTTCGTTATCGGAGATTTGCTTACGGCCTGCCTCGGAAGGGAACACAG
ACTTCTACGAGGTCGATCACAGGTACCAGAGTGGAGTTTATACTTGCAATTGA
AA sequence
>Lus10007487 pacid=23176527 polypeptide=Lus10007487 locus=Lus10007487.g ID=Lus10007487.BGIv1.0 annot-version=v1.0
MSCLALSLQPSNGSDILIQTREWFPPPRALVATSAFRLTRLAFAATKNPTRNQSSSSDEYSPSVSSDSLSSLGDDPLAASSGQLIVGVESQYRVVYRLVN
GIYVLGITIADDHDNSVNVFECIHVVNQAVSVVVAACRGVDVTPEKLSRKYAEIYMALDIVLRGVSSIRLAAMLASIHGESIAKMVHSALDTESKIRGGE
SWPAVEGHAIERESNVAAFSNAVFELPPETLASGDHVAASLAPVVSAGEQLDNKKEEKEEEKEETKDPFAASEVVNKQEDLAGEFKKDKSQSKDLTLALA
GLEVTALPNAEATKATHINVEGFEGDYGGIEFNNEQASLGETFEGFSEAWGGGLDASEFVGTKKIPKQEGLSGLELLQTGADPAVVAKSAATGDGTGTPL
DNLLVQKTEMKGPEMYIVEEVSAEFRESQLARVGLMGVVYLKTLPNKRAGGEETEFSFRVDNTKAVKRFVMDSSKVSSLGNGMFHVRTAASDEAIPIFKY
SLVPSLTPLPLRVRLVQRHSGTLFSVMIQYVSNPDLPVPLSDVTFVLKLPVDPTLLTVSPKAALNRSQKELKWVVPEIPLKGSPGKLRVRMPVDISDGEG
DEDIEAVCYVKFSMEGATSLSEICLRPASEGNTDFYEVDHRYQSGVYTCN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G57460 unknown protein Lus10007487
[exp]
0 1
AT5G17630 Nucleotide/sugar transporter f... Lus10004312
[exp]
4.7 0.8142
AT2G16800 high-affinity nickel-transport... Lus10027851
[exp]
5.5 0.8701
AT1G56340 AtCRT1a, CRT1 calreticulin 1a (.1.2) Lus10010923
[exp]
16.7 0.8683
AT1G71070 Core-2/I-branching beta-1,6-N-... Lus10010887
[exp]
19.4 0.8528
AT2G17980 ATSLY1 Sec1/munc18-like (SM) proteins... Lus10023936
[exp]
20.0 0.8387
AT5G61790 CNX1, ATCNX1 calnexin 1 (.1) Lus10032521
[exp]
21.1 0.8351
AT5G16760 AtITPK1 inositol \(1,3,4\) P3 5/6-kina... Lus10038765
[exp]
26.3 0.8337
AT5G08570 Pyruvate kinase family protein... Lus10017364
[exp]
31.0 0.8077
AT3G16200 unknown protein Lus10006829
[exp]
41.6 0.8236
AT3G07950 rhomboid protein-related (.1) Lus10041408
[exp]
45.0 0.8273

Lus10007487 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.