Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43090 290 / 4e-99 Aconitase/3-isopropylmalate dehydratase protein (.1.2) AT3G58990 249 / 4e-83 IPMI1 isopropylmalate isomerase 1 (.1) AT2G43100 241 / 1e-79 ATLEUD1, IPMI2 isopropylmalate isomerase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028964 [exp] 356 / 4e-125 AT2G43090 309 / 1e-106 Aconitase/3-isopropylmalate dehydratase protein (.1.2) Lus10007804 [exp] 204 / 4e-67 AT2G43090 205 / 6e-68 Aconitase/3-isopropylmalate dehydratase protein (.1.2) Lus10004742 [exp] 0 / 1 AT2G43100 155 / 6e-72 isopropylmalate isomerase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G107800 [exp] 291 / 1e-99 AT2G43090 291 / 1e-99 Aconitase/3-isopropylmalate dehydratase protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0364 [flax] [poplar] Leu-IlvD PF00694 [flax] [poplar] Aconitase_C Aconitase C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10007488 pacid=23176462 polypeptide=Lus10007488 locus=Lus10007488.g ID=Lus10007488.BGIv1.0 annot-version=v1.0 ATGGCGGCGGCTTACGCATCCTCGCCGGCCCCGGCCGCTTCTGCCTTCTCCGAAACGAAATCGTCCTTTTCTACCTCCACCTTACGACTGGTCAACTTCG CCTCTATTTCTTCGAAGCGTTCGTTCATCAGACGATCCCTCATATCGAAGGCGCCGATCGTCTGCACTCAGCGTGCTTCTTTGATCTCTCCTCGCGCTGC ATCGGAATCCTCGTCGACTGCCTCTCCTGCCACATTTCACGGCCTCTGCTACGTAGTCGGCGACAACATCGACACCGACCAGATCATCCCAGCCGAGTAC CTAACTCTCGTCCCTTCGAACCCTGCCGAATACGAGAAGCTAGGATCCTACGCCTTGGTTGGCCTTCCTGCGTCGTATGAGACGAGATTCATCGAGGCGG GCGAGACAAAGACGAAGTACGCGATCGTTATCGCGGGAGAGAACTTCGGATGCGGGTCGTCTCGCGAGCACGCGCCTGTTGCTTTGGGAGCTGCGGGAGT GGCGGCGGTGGTGGCGCAGTCGTACGCGAGGATCTTCTTCAGGAACTCTGTCGCGACAGGGGAAGTTTATCCGTTGGAGACAGAGGTTAGGGTTTGCGAG GAGTGCAGAACTGGGGATGAGTTGACGATTGAGCTGGAACAAAGCCGATTGATCAACCACACAACCGGGAAGGAGTACAAGTTGCTGCCTATTGGCGATG CCGGACCGGTGATTGATGCCGGAGGAATTTTTGCGTTTGCGAGGAAGGCTGGGATGATTCCCGCGCAGGCTGCTTAA
AA sequence Show only first row Show all	>Lus10007488 pacid=23176462 polypeptide=Lus10007488 locus=Lus10007488.g ID=Lus10007488.BGIv1.0 annot-version=v1.0 MAAAYASSPAPAASAFSETKSSFSTSTLRLVNFASISSKRSFIRRSLISKAPIVCTQRASLISPRAASESSSTASPATFHGLCYVVGDNIDTDQIIPAEY LTLVPSNPAEYEKLGSYALVGLPASYETRFIEAGETKTKYAIVIAGENFGCGSSREHAPVALGAAGVAAVVAQSYARIFFRNSVATGEVYPLETEVRVCE ECRTGDELTIELEQSRLINHTTGKEYKLLPIGDAGPVIDAGGIFAFARKAGMIPAQAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43090			Aconitase/3-isopropylmalate de...		Lus10007488 [exp]	0	1
AT2G37410		ATTIM17-2	TRANSLOCASE OF THE INNER MEMBR...		Lus10043029 [exp]	2.4	0.8724
AT2G20940			Protein of unknown function (D...		Lus10025069 [exp]	2.8	0.8943
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10004109 [exp]	3.0	0.8956
AT5G42060			DEK, chromatin associated prot...		Lus10032409 [exp]	3.0	0.8925
AT2G25490		FBL6, EBF1	EIN3-binding F box protein 1 (...		Lus10002165 [exp]	4.9	0.8646
AT5G58530			Glutaredoxin family protein (....		Lus10040949 [exp]	6.0	0.8274
AT4G37650	GRAS	SGR7, SHR	SHORT ROOT, SHOOT GRAVITROPISM...		Lus10012089 [exp]	7.1	0.8287
AT3G44110		ATJ3	DNAJ homologue 3 (.1.2)		Lus10013364 [exp]	7.1	0.8754
AT1G77670			Pyridoxal phosphate (PLP)-depe...		Lus10004089 [exp]	7.5	0.8859
AT1G76920			F-box family protein (.1)		Lus10028591 [exp]	8.4	0.8410

Compare expression of checked genes

Lus10007488 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.