Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17380 1115 / 0 MSH4, ATMSH4 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) AT4G25540 149 / 5e-37 ATMSH3, MSH3 homolog of DNA mismatch repair protein MSH3 (.1) AT3G18524 140 / 3e-34 ATMSH2, MSH2 MUTS homolog 2 (.1) AT3G24495 116 / 1e-26 ATMSH7, MSH7, MSH6-2 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) AT4G02070 108 / 3e-24 ATMSH6, MSH6-1 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) AT3G20475 96 / 4e-20 ATMSH5 MUTS-homologue 5 (.1) AT3G24320 57 / 3e-08 CHM1, ATMSH1, CHM, MSH1 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1) AT1G65070 49 / 1e-05 DNA mismatch repair protein MutS, type 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028966 [exp] 301 / 5e-95 AT4G17380 413 / 3e-137 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) Lus10042967 [exp] 144 / 2e-35 AT3G18524 1479 / 0.0 MUTS homolog 2 (.1) Lus10027452 [exp] 135 / 1e-34 AT4G25540 447 / 1e-148 homolog of DNA mismatch repair protein MSH3 (.1) Lus10032469 [exp] 140 / 4e-34 AT3G18524 1449 / 0.0 MUTS homolog 2 (.1) Lus10005743 [exp] 137 / 3e-33 AT4G25540 1305 / 0.0 homolog of DNA mismatch repair protein MSH3 (.1) Lus10017724 [exp] 120 / 8e-28 AT3G24495 1267 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Lus10033095 [exp] 112 / 3e-25 AT3G24495 1138 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Lus10010010 [exp] 108 / 6e-24 AT4G02070 1559 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Lus10000166 [exp] 68 / 2e-13 AT4G17380 182 / 9e-55 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G156200 [exp] 1135 / 0 AT4G17380 1226 / 0.0 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) Potri.012G060000 [exp] 139 / 5e-34 AT3G18524 1438 / 0.0 MUTS homolog 2 (.1) Potri.015G142900 [exp] 135 / 2e-32 AT4G25540 1313 / 0.0 homolog of DNA mismatch repair protein MSH3 (.1) Potri.006G156314 [exp] 117 / 5e-27 AT3G24495 1348 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Potri.006G159200 [exp] 116 / 1e-26 AT3G24495 1372 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Potri.014G121701 [exp] 110 / 1e-24 AT4G02070 1402 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Potri.008G191051 [exp] 93 / 7e-21 AT4G02070 294 / 1e-91 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Potri.011G089500 [exp] 96 / 2e-20 AT3G20475 1264 / 0.0 MUTS-homologue 5 (.1) Potri.003G078601 [exp] 82 / 1e-18 AT4G17380 103 / 1e-26 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) Potri.010G065000 [exp] 57 / 4e-08 AT3G24320 1670 / 0.0 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00488 [flax] [poplar] MutS_V MutS domain V CL0023 [flax] [poplar] PF05192 [flax] [poplar] MutS_III MutS domain III CL0023 [flax] [poplar] PF05190 [flax] [poplar] MutS_IV MutS family domain IV
Representative CDS sequence Show only first row Show all	>Lus10007489 pacid=23176466 polypeptide=Lus10007489 locus=Lus10007489.g ID=Lus10007489.BGIv1.0 annot-version=v1.0 ATGGAGGACGATGGAGAGAGATCAAGCATCGTGATCGGTCTGATCGAGAACAGAGCCAAAGAGGTTGGAATGGCTGCGTTTAATATGAGATCAGCTGCTC TGGACCTTTCTCAATACATTGAAACCAGCATTTCATATCACAACACAAAAACTTTGCTGCAATTTTACGATCCAGTTGTGGTAATTGTTCCTCCGAACAA GCTGGCAGCTGATGGCATGGTTGGAGTTTCTGAATTGGTGGACAGATACTATGCTCCAATAAGGAAGGTTGTAATGGCCCGTGGATGTTTTGACGATACC AGGGGCGCTGTAATGGTGAAAAGTTTAGCTGCAAGGGAGCCTTCAGCACTGGGTCTTGAGACTTACTACAAGCAATACTATCTTTGTTTGGCTGCCGCTT CTGCTGCAATCAAATGGATAGAAGCCGAAAAAGGAGTTATTGTGACGAACCATTCCTTGTCGGTTACCTTTAATGGATCATTTGATCACATGAACATAGA TGCAACTAGTGTTCACAACTTGGAATTAATTGACCCACTTCACTCTTCACTTTTGGGCACAACCAACAAGAAGAAAAGTTTGTTTCACATGCTCAAGACA ACAAAAACCGCAGGAGGAACCAGGCTTCTACGAGCCAATCTGTTGCAGCCCTTAAAAGACATCGAAACGATCAACGCACGTCTTAATTGCCTGGATGAGC TAATGAGCAATGAACAGCTATTCTTTGGACTTACTCAGGTTCTCCGCAAGTTTCCTAAAGAGACTGATAGGGTACTTTGTCACTTCTGCTTCAAGCCAAA AAAAGTAACAAACGAGGTTATTGGTGTTGACAATGCCAGAAAAAGCCAAGTGTTGATATCAAGCATTATTCTGCTTAAAACTACATTGGAAGCATTGCCT TTGCTTGGGAGGGTTTTGAAGGATGCAAACTGTGTTCTACTTTCAAACATTTACAGGACTGTCTGTGAGAATGATAAATACTCTACCATGAGGAAGAGAA TTGGCGAGGTTATTGATGAAGATGTACTCCATGCACGTGTACCTTTTATTGCCCGTACCCAGCAGTGTTTTGCTGTCAAAGCTGGAATCGATGGGCTTCT GGATATTGCAAGGAGAACATTCTGTGATACCAGTGAAGCTATACACAACCTTGCAAACAAGTATCGTGAAGAATTCAAATTGCCAAATTTGAAACTTCCA TTTAACAATAGGCGAGGGTTTTACTTTAGCATTCCGCAAAAGGATATTCAGGGAAAGCTTCCGAGGAAGTTCATCCAGGTCCTAAAACATGGGAACAATG TACACTGCTCAACCTTAGAACTAGCTTCTCTTAATGTAAGAAATAAGTCTGCTGCTGGCGAATGCTATATTAGAACAGAAGTTTGCCTTGAAGCTCTTGT AGACGCCATCAGGGAGGACGTCTCTGCACTTACACTTCTGGCAGAGGCTTTATGCCTTTTAGACATGATAGTTAATTCATTTGCACATACTATCTCAACT AAGCCTGTTGGGCGATACGTTAGACCTGAATTTACCAATGATGGCCCATTGGCAATCGACTCTGGACGGCACCCAATTCTGGAAACCATACACAATGAGT TTGTTCCCAACAATATATTTATCTCGGAAGCATCAAACATGGTAACTGTAATGGGCCCAAACATGAGTGGAAAGAGCACATATCTTCAGCAAGTATGTCT TATTGTCATACTTGCTCAAATCGGCTGCTATGTTCCCGCTTGCTTTGCAACTATTCGGGTAGTCGATCATATATTTACAAGGATGGGATCAACAGATAGC TTGGAATCAAACTCCAGTACGTTCATGACAGAGATGAAAGAGACGGCTTTTATCATGCAGAACGTCTCCCAAAGAGCAACTTCATCCACTGACGGATTTG CTATGGCATGGAGCTGTTGCGAACATCTGTTATCGCTCAAAGCGTTCACGATCTTTGCAACCCATATGGAGAATCTAGCGGAACTTGCAGCACTCTATCC AAATGTGAAGATCCTACACTTCGATGTCGATATACGAAACAACCGCTTGGATTTCAAGGTATAA
AA sequence Show only first row Show all	>Lus10007489 pacid=23176466 polypeptide=Lus10007489 locus=Lus10007489.g ID=Lus10007489.BGIv1.0 annot-version=v1.0 MEDDGERSSIVIGLIENRAKEVGMAAFNMRSAALDLSQYIETSISYHNTKTLLQFYDPVVVIVPPNKLAADGMVGVSELVDRYYAPIRKVVMARGCFDDT RGAVMVKSLAAREPSALGLETYYKQYYLCLAAASAAIKWIEAEKGVIVTNHSLSVTFNGSFDHMNIDATSVHNLELIDPLHSSLLGTTNKKKSLFHMLKT TKTAGGTRLLRANLLQPLKDIETINARLNCLDELMSNEQLFFGLTQVLRKFPKETDRVLCHFCFKPKKVTNEVIGVDNARKSQVLISSIILLKTTLEALP LLGRVLKDANCVLLSNIYRTVCENDKYSTMRKRIGEVIDEDVLHARVPFIARTQQCFAVKAGIDGLLDIARRTFCDTSEAIHNLANKYREEFKLPNLKLP FNNRRGFYFSIPQKDIQGKLPRKFIQVLKHGNNVHCSTLELASLNVRNKSAAGECYIRTEVCLEALVDAIREDVSALTLLAEALCLLDMIVNSFAHTIST KPVGRYVRPEFTNDGPLAIDSGRHPILETIHNEFVPNNIFISEASNMVTVMGPNMSGKSTYLQQVCLIVILAQIGCYVPACFATIRVVDHIFTRMGSTDS LESNSSTFMTEMKETAFIMQNVSQRATSSTDGFAMAWSCCEHLLSLKAFTIFATHMENLAELAALYPNVKILHFDVDIRNNRLDFKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17380		MSH4, ATMSH4	ARABIDOPSIS MUTS HOMOLOG 4, M...		Lus10007489 [exp]	0	1
AT4G00060		MEE44	maternal effect embryo arrest ...		Lus10015887 [exp]	2.0	0.8912
AT2G36850		CHOR, ATGSL8, A...	CHORUS, glucan synthase-like 8...		Lus10040891 [exp]	3.6	0.8938
AT4G15030			unknown protein		Lus10029514 [exp]	4.2	0.8714
AT4G09140		ATMLH1	ARABIDOPSIS THALIANA MUTL-HOMO...		Lus10033274 [exp]	5.3	0.8688
AT4G32850		PAP(IV), PAP(IV...	poly\(A\) polymerase IV, poly\...		Lus10006029 [exp]	6.9	0.8748
AT5G49880			mitotic checkpoint family prot...		Lus10007439 [exp]	7.4	0.8741
AT4G13030			P-loop containing nucleoside t...		Lus10038204 [exp]	7.5	0.8563
AT5G08300			Succinyl-CoA ligase, alpha sub...		Lus10017331 [exp]	8.2	0.8461
AT2G47980		SCC3, ATSCC3	sister-chromatid cohesion prot...		Lus10008306 [exp]	9.8	0.8804
AT1G11660			heat shock protein 70 (Hsp 70)...		Lus10040078 [exp]	10.4	0.8565

Compare expression of checked genes

Lus10007489 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.