Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17370 590 / 0 Oxidoreductase family protein (.1) AT1G66130 43 / 0.0002 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028967 [exp] 709 / 0 AT4G17370 576 / 0.0 Oxidoreductase family protein (.1) Lus10013633 [exp] 45 / 9e-05 AT4G09670 486 / 4e-173 Oxidoreductase family protein (.1) Lus10001327 [exp] 43 / 0.0002 AT4G09670 484 / 1e-172 Oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G078500 [exp] 642 / 0 AT4G17370 605 / 0.0 Oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0139 [flax] [poplar] GADPH_aa-bio_dh PF02894 [flax] [poplar] GFO_IDH_MocA_C Oxidoreductase family, C-terminal alpha/beta domain CL0063 [flax] [poplar] NADP_Rossmann PF01408 [flax] [poplar] GFO_IDH_MocA Oxidoreductase family, NAD-binding Rossmann fold
Representative CDS sequence Show only first row Show all	>Lus10007490 pacid=23176485 polypeptide=Lus10007490 locus=Lus10007490.g ID=Lus10007490.BGIv1.0 annot-version=v1.0 ATGGCTGAATCTGGGGCAGCAGCTGTCAAGTACGGGATCATAGGAGTTGGGATGATGGGGAGAGAGCACCTCATTAATCTCCACCACCTCCGCTCCGGCC ACAACGTAGCCGTGGTATGCATTGCGGATCCTCACCTCCCTTCCCAGCAGCAGGCGATCGCCCTCGCACAGTCTTTCGGATGGAACGATCTTCAGGTGTT TTCCGGCCACCAGGAGTTGCTGGACAGCGGTCTCTGCGACGTCGTGGTTGTTTCCAGTCCAAACATGACTCACTTCCAGATTCTCATGGATATCATCGCT CACCACAAGGCACACCACGTGCTCGTCGAAAAGCCGCTCTGCACCACCGTTGCCCACTGCAAACAGGTAGTGGATGCTGCAAGGAAGAGGTCAGATATGC TGGTTCAGGTTGGACTGGAGTACCGATACATGCCGCCTGTTGCCAAGCTGATCGAGATCGTCAAAAGCGGATCTATAGGACATGTGAAGATGGTGGCCAT CAGGGAACATAGGTTTCCCTTTCTGGTTAAGGTTCATAACTGGAACAGGTTCAATATCAACACTGGAGGAACTCTGGTGGAGAAGTGTTGCCACTTCTTT GATCTGATGAGGCTGTTTGCTGGTGCCAATCCTGTTCGAGTCATGGCTTCCGGCGCTGTAGATGTTAACCACAAGGATGAAATTTATGATGGGAAGGTAC CTGATATCATTGACAATGCGTATGTGATTGTCGAGTTTGATAACGGGTCGAGAGGAATGTTGGACCTTTGCATGTTTGCTGAAGGTAGCAAGAATGAGCA AGAAATATCAGTCGTGGGTGACATTGGAAAGGGAGAGGCTTTCGTTCCGGAGAGCATAGTGCGGGTTGGTGCTCGAGCTACTGGTAGAGATGGCGTGGAG ACCTTGAAAACTGACGATGACAGAATAATATACGACGGGCTTCATCATGGATCAAGCTACTTAGAACACCTAACCTTCCTGAGTGCAGTAAGAGCAGAAG ATGAAAAAGTTGCTGCGGTGGATTTGCAAGATGGACTGATTTCAGTAGCTATTGGAGTAGCGGCGCAGTGTTCCATCGAGGAGGGCCGATTCGTAAGAAT CGATGAAGTCTTGGAGGATGAAAGGATTTAG
AA sequence Show only first row Show all	>Lus10007490 pacid=23176485 polypeptide=Lus10007490 locus=Lus10007490.g ID=Lus10007490.BGIv1.0 annot-version=v1.0 MAESGAAAVKYGIIGVGMMGREHLINLHHLRSGHNVAVVCIADPHLPSQQQAIALAQSFGWNDLQVFSGHQELLDSGLCDVVVVSSPNMTHFQILMDIIA HHKAHHVLVEKPLCTTVAHCKQVVDAARKRSDMLVQVGLEYRYMPPVAKLIEIVKSGSIGHVKMVAIREHRFPFLVKVHNWNRFNINTGGTLVEKCCHFF DLMRLFAGANPVRVMASGAVDVNHKDEIYDGKVPDIIDNAYVIVEFDNGSRGMLDLCMFAEGSKNEQEISVVGDIGKGEAFVPESIVRVGARATGRDGVE TLKTDDDRIIYDGLHHGSSYLEHLTFLSAVRAEDEKVAAVDLQDGLISVAIGVAAQCSIEEGRFVRIDEVLEDERI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17370			Oxidoreductase family protein ...		Lus10007490 [exp]	0	1
AT1G15760			Sterile alpha motif (SAM) doma...		Lus10041687 [exp]	2.4	0.8131
AT3G62040			Haloacid dehalogenase-like hyd...		Lus10038016 [exp]	2.8	0.7794
AT1G76520			Auxin efflux carrier family pr...		Lus10025166 [exp]	4.2	0.7327
AT4G17370			Oxidoreductase family protein ...		Lus10028967 [exp]	7.7	0.7535
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10012959 [exp]	8.9	0.7634
AT3G62040			Haloacid dehalogenase-like hyd...		Lus10009256 [exp]	9.0	0.7593
AT1G21200	Trihelix		sequence-specific DNA binding ...		Lus10042805 [exp]	10.2	0.7469
AT5G19040		ATIPT5	Arabidopsis thaliana ISOPENTEN...		Lus10004428 [exp]	10.4	0.7920
AT3G20410		CPK9	calmodulin-domain protein kina...		Lus10032640 [exp]	11.4	0.8024
AT2G47890	CO	COL13	B-box type zinc finger protein...		Lus10005936 [exp]	13.2	0.7730

Compare expression of checked genes

Lus10007490 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.