Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24930 199 / 4e-64 thylakoid lumenal 17.9 kDa protein, chloroplast (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028969 [exp] 358 / 2e-126 AT4G24930 221 / 7e-73 thylakoid lumenal 17.9 kDa protein, chloroplast (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G097700 [exp] 213 / 2e-69 AT4G24930 235 / 2e-78 thylakoid lumenal 17.9 kDa protein, chloroplast (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007492 pacid=23176504 polypeptide=Lus10007492 locus=Lus10007492.g ID=Lus10007492.BGIv1.0 annot-version=v1.0 ATGGAGCTGATTCGTTGGATTTCGCTTCCACATCTGGCGGCGGCACCGGCACCGGCACCTTCTTCATCCTCCTCCTCCTCCTCCAAACTTCCTCCACTCC ACACCTCAATTTCCACTCTCCGCCGCAAGAACAACTACATCATCCCTTTCTCCAACCATCTTCTCTCCTTCGCCATTGCCCTCACACTAAACTCTCCTCT CCCCTCTTACGCAATCCCTTACCCAAACTCTCCCCCTCCGGCCTCCCCCACCACTCCCTTCTCCCAGTCCAAAACCCTCCAGATCGGCCTCGAAGACGGC AGGATCCGACCCTGCCCGTCCACCAATCCCGGCTGCGTATCAACCAATCCCAAGTCGTCATCCTTCTCCTTCCCCTGGAGGATCCCCCACCCGGATGACG CTGCTGTAATGGCGGAGGAATCCGCAGTCCGGAAATTGGAGGAAGCAATTCTGACAACGCAGAAGAATCCTGAGATTCGAGTCGTGGAAAGTTCCCCCTA CGGAGGGAGGTATTTGGAGGCCGAGGTGGATGGGTTCTATGGGAAGAGGGATATTCTCGAGTTCTTGGTGAAAGGGGATGTCGTCACTTACAGATGTGTG GCTAAGAATGTCACTTTTGTTTATCCCTTCACTACCGCCATTGGAGACTCTAAAGGACAGATGGACCGGCTCGGGCAGATCGTTAACCAACTCGGCTGGT TCGCTCTCACCTTTGACTCCATGGGTTAG
AA sequence Show only first row Show all	>Lus10007492 pacid=23176504 polypeptide=Lus10007492 locus=Lus10007492.g ID=Lus10007492.BGIv1.0 annot-version=v1.0 MELIRWISLPHLAAAPAPAPSSSSSSSSKLPPLHTSISTLRRKNNYIIPFSNHLLSFAIALTLNSPLPSYAIPYPNSPPPASPTTPFSQSKTLQIGLEDG RIRPCPSTNPGCVSTNPKSSSFSFPWRIPHPDDAAVMAEESAVRKLEEAILTTQKNPEIRVVESSPYGGRYLEAEVDGFYGKRDILEFLVKGDVVTYRCV AKNVTFVYPFTTAIGDSKGQMDRLGQIVNQLGWFALTFDSMG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24930			thylakoid lumenal 17.9 kDa pro...		Lus10007492 [exp]	0	1
AT1G14345			NAD(P)-linked oxidoreductase s...		Lus10037201 [exp]	3.6	0.9309
AT1G17100			SOUL heme-binding family prote...		Lus10012559 [exp]	4.9	0.9178
AT1G64450			Glycine-rich protein family (....		Lus10003189 [exp]	5.2	0.8858
AT4G03600			unknown protein		Lus10018599 [exp]	6.2	0.8759
AT4G24930			thylakoid lumenal 17.9 kDa pro...		Lus10028969 [exp]	6.3	0.9204
AT4G38430		ATROPGEF1, ROPG...	rho guanyl-nucleotide exchange...		Lus10021234 [exp]	6.7	0.8784
AT4G38100			unknown protein		Lus10002647 [exp]	10.1	0.8767
AT4G38660			Pathogenesis-related thaumatin...		Lus10041899 [exp]	10.1	0.8616
AT1G31330		PSAF	photosystem I subunit F (.1)		Lus10040639 [exp]	10.5	0.8982
AT1G18060			unknown protein		Lus10041995 [exp]	13.9	0.8838

Compare expression of checked genes

Lus10007492 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.