Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40140 510 / 1e-174 C3HZnF ATSZF2, CZF1, ZFAR1 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) AT5G58620 483 / 4e-164 C3HZnF zinc finger (CCCH-type) family protein (.1) AT3G55980 446 / 5e-150 C3HZnF ATSZF1 salt-inducible zinc finger 1 (.1) AT2G41900 370 / 5e-119 C3HZnF OXS2 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) AT5G12850 345 / 2e-109 C3HZnF PEI1 CCCH-type zinc finger protein with ARM repeat domain (.1) AT5G07500 182 / 8e-53 C3HZnF PEI1 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT4G29190 178 / 4e-50 C3HZnF AtOZF2 Arabidopsis thaliana oxidation-related zinc finger 2, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT2G25900 174 / 4e-49 C3HZnF ATTZF1, ATCTH A. THALIANA TANDEM ZINC FINGER PROTEIN 1, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT2G19810 174 / 7e-49 C3HZnF AtOZF1 Oxidation-related Zinc Finger 1, CCCH-type zinc finger family protein (.1) AT1G03790 166 / 3e-45 C3HZnF SOM SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028970 [exp] 1063 / 0 AT2G40140 615 / 0.0 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Lus10019709 [exp] 365 / 4e-116 AT2G41900 759 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Lus10040662 [exp] 260 / 2e-80 AT5G58620 341 / 2e-112 zinc finger (CCCH-type) family protein (.1) Lus10035006 [exp] 181 / 4e-51 AT2G19810 380 / 2e-131 Oxidation-related Zinc Finger 1, CCCH-type zinc finger family protein (.1) Lus10012922 [exp] 180 / 1e-50 AT2G19810 387 / 9e-134 Oxidation-related Zinc Finger 1, CCCH-type zinc finger family protein (.1) Lus10017708 [exp] 167 / 7e-47 AT1G03790 252 / 7e-82 SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10033665 [exp] 165 / 6e-46 AT1G03790 240 / 6e-77 SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10018621 [exp] 154 / 3e-41 AT1G03790 245 / 3e-78 SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10018243 [exp] 66 / 8e-12 AT5G58620 100 / 3e-24 zinc finger (CCCH-type) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G187900 [exp] 767 / 0 AT2G40140 570 / 0.0 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Potri.008G069400 [exp] 742 / 0 AT2G40140 557 / 0.0 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Potri.012G145800 [exp] 721 / 0 AT2G40140 585 / 0.0 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Potri.001G252600 [exp] 611 / 0 AT5G58620 572 / 0.0 zinc finger (CCCH-type) family protein (.1) Potri.009G046800 [exp] 579 / 0 AT5G58620 553 / 0.0 zinc finger (CCCH-type) family protein (.1) Potri.016G053700 [exp] 402 / 1e-130 AT2G41900 820 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.001G266700 [exp] 399 / 4e-130 AT2G41900 708 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.006G053800 [exp] 365 / 1e-116 AT2G41900 817 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.006G053900 [exp] 361 / 1e-115 AT2G41900 791 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.009G061000 [exp] 362 / 2e-115 AT2G41900 672 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0537 [flax] [poplar] CCCH_zf PF00642 [flax] [poplar] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Lus10007493 pacid=23176470 polypeptide=Lus10007493 locus=Lus10007493.g ID=Lus10007493.BGIv1.0 annot-version=v1.0 ATGGTGGTAGAGCAATCATCGTTCAGGCAGAAAGCCAGCAACTTGGGGAGATGCTCAGTTTTGCTCGAGCTGTCTGCTATTGGGGATCTAGTTTCATTCA GAAGCGAGGTTGAAGGCAAAGGATTGGATGTCGATGAAGCAAGCTGTTGGTACGGAAGGAGAATCGGCTCGAGGAAGATGGGGTTCGAGGAGAGAACTCC TCTGATGATTGCAGCCATGTTTGGAAGCACTGATGTTTTGAAGTATATCATCGGAACTGGCAAAGTTGATGTGAATCGGGCCTGCGGCTCAGATATGGTC ACTGCTCTTCACTGTGCTGTTGCTGGTGGTTCGAACTCTTCGGTTGCGATTGTCAAGATGCTGCTTGATGCTGATGCTGATTCCAACTGCCTTGATTCGA ACGGGAACAAACCGGAGGATCTGTTCGCTCCCTCGATGAAGTGCCCTTGCAATTCGAGGAAGAAGCTGATCGAGTCGCTGCTGAAAGGTGAGAGCTTGAG CGAAGATGAGGAAGAAAAGCTTATAGCTTTGCCTCAGTTTGCTAAAGAAGGAATTGAAAGGAAAGAGTATCCTATCGATGTCTCTTTACCTGACATCAAC ACCGGAGTATACGGGAGCGATGAGTTCAGAATGTATTCCTTCAAGGTGAAGCCTTGCTCGAGGGCGTACTCTCACGACTGGACCGAGTGCCCCTTTGTCC ACCCGGGGGAGAACGCGAGGAGGAGGGACTTGAGGAAATACCCTTACAGCTGCGTTCCTTGCCCCGAATTCCGGAAGGGGTCTTGCCAGAAGGGCGACTC GTGCGAATATGCTCATGGAGTCTTCGAGTCGTGGCTGCACCCGGCACAGTACAGGACCAGGCTTTGTAAAGACGAAACCGGCTGTGCGAGGAAAGTCTGT TTCTTTGCTCACAAACCCGAGGAGTTGCGTCCTGTGTATGCCTCCACCGGTTCAGCCATGCCTTCTCCGAGGTCTTCTGGTTCTGCGGCCAGTGCGATGG ACATGGCATCGTTGAGTCCCTTGTCTCTCGGTACGACATCCTTGCCTACCGCGGTTTCGACTCCTCCGATGTCCCCTCACGCTTCGTCTTCTCCGAAGAG TGGAGGGTTGTGGCAGAACAAGATCAATTTCACACCGCCAGCTTTGCAGCTTCCGGGTAGCAGATTGAAGACAGCCATGAGCGCTAGAGATTTCGATCTG GAGCTGGAATTGCTCCGGTTCGAGAATCATAACCAGATGCAGCAACAGCAGCTGATCGATGAGATAACCGGTCTCTCCTCCTCCCCGACTCGCTGGAGCC AGGACTTCAACAGGATGGGAGAGATGAAGCCGACTAATCTCGATGATGCGTTCAGATCGTTGGATCCTTCTTTGTTCTCTCCGATGCAGCAGCAGTCTCC GACCGGGATGCAAATCCGTCAGAACATGAACCAACTCCGTTCAAGTTTCCCCTCCAATTTATCGTCATCCCCAGTAAGGAAGCAGCAGGGAGGAGGATCT TACGGGTTCGAATCTTCAGCTGCAGCTGCGATGAACTCGAGATCCTCAGCGTTTTCGAGCCGCAGCCAGAGCTTCATTGACCGCGGAGCAGTATCGGTCA ACCGTCTTGGTGTGACTGCAGCAGCGAACTCGGTGTCGATGATGTCTTCGAACTGGGGATCCCCCGGCGGGAAACTCGACTGGGGGATGCAAGGAGACGA GCTGAACAAGCTGAAGAGGTCCGCTTCTTTCGGATTCCGAGGTGGCAACAACAATAACAGTCCGGTGACCAGACCTGCAGATGTAGCGATGTCAAACGGG CAGGAGCCGGACATATCATGGGTGAACTCGTTGGTTAAAGATGCTCCGGAGAACCGTCACAGCCATGTGAATGGAGTTCGCGAGTCCATTCCGCCATGGA TGGAGCAGATGTACATGGAACAGGAGCAGATGGTGGCGTGA
AA sequence Show only first row Show all	>Lus10007493 pacid=23176470 polypeptide=Lus10007493 locus=Lus10007493.g ID=Lus10007493.BGIv1.0 annot-version=v1.0 MVVEQSSFRQKASNLGRCSVLLELSAIGDLVSFRSEVEGKGLDVDEASCWYGRRIGSRKMGFEERTPLMIAAMFGSTDVLKYIIGTGKVDVNRACGSDMV TALHCAVAGGSNSSVAIVKMLLDADADSNCLDSNGNKPEDLFAPSMKCPCNSRKKLIESLLKGESLSEDEEEKLIALPQFAKEGIERKEYPIDVSLPDIN TGVYGSDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDLRKYPYSCVPCPEFRKGSCQKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCARKVC FFAHKPEELRPVYASTGSAMPSPRSSGSAASAMDMASLSPLSLGTTSLPTAVSTPPMSPHASSSPKSGGLWQNKINFTPPALQLPGSRLKTAMSARDFDL ELELLRFENHNQMQQQQLIDEITGLSSSPTRWSQDFNRMGEMKPTNLDDAFRSLDPSLFSPMQQQSPTGMQIRQNMNQLRSSFPSNLSSSPVRKQQGGGS YGFESSAAAAMNSRSSAFSSRSQSFIDRGAVSVNRLGVTAAANSVSMMSSNWGSPGGKLDWGMQGDELNKLKRSASFGFRGGNNNNSPVTRPADVAMSNG QEPDISWVNSLVKDAPENRHSHVNGVRESIPPWMEQMYMEQEQMVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40140	C3HZnF	ATSZF2, CZF1, Z...	\(SALT-INDUCIBLE ZINC FINGER 2...		Lus10007493 [exp]	0	1
AT2G40140	C3HZnF	ATSZF2, CZF1, Z...	\(SALT-INDUCIBLE ZINC FINGER 2...		Lus10028970 [exp]	1.0	0.9770
AT2G26530		AR781	Protein of unknown function (D...		Lus10032881 [exp]	1.7	0.9529
AT3G20600		NDR1	non race-specific disease resi...		Lus10011162 [exp]	2.0	0.9573
AT3G49930	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10018696 [exp]	4.0	0.9333
AT1G18210			Calcium-binding EF-hand family...		Lus10031345 [exp]	4.2	0.9303
AT4G38900	bZIP	AtbZIP29	Basic-leucine zipper (bZIP) tr...		Lus10024314 [exp]	4.7	0.8990
AT1G76600			unknown protein		Lus10037249 [exp]	5.1	0.9178
AT5G53250		AGP22, ATAGP22	arabinogalactan protein 22 (.1...		Lus10037436 [exp]	5.5	0.9228
AT2G26530		AR781	Protein of unknown function (D...		Lus10006479 [exp]	6.3	0.9005
AT5G24590	NAC	TIP, ANAC091	Arabidopsis NAC domain contain...		Lus10032919 [exp]	7.4	0.9332

Compare expression of checked genes

Lus10007493 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.