Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07780 299 / 2e-102 TRP6, PAI1 TRANSIENT RECEPTOR POTENTIAL 6, phosphoribosylanthranilate isomerase 1 (.1.2.3.4.5) AT5G05590 299 / 3e-102 PAI2 phosphoribosylanthranilate isomerase 2 (.1.2) AT1G29410 188 / 1e-59 PAI3 phosphoribosylanthranilate isomerase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028971 [exp] 413 / 6e-147 AT1G07780 341 / 2e-118 TRANSIENT RECEPTOR POTENTIAL 6, phosphoribosylanthranilate isomerase 1 (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G145600 [exp] 317 / 6e-109 AT1G07780 332 / 7e-115 TRANSIENT RECEPTOR POTENTIAL 6, phosphoribosylanthranilate isomerase 1 (.1.2.3.4.5) Potri.008G069500 [exp] 315 / 9e-109 AT1G07780 340 / 3e-118 TRANSIENT RECEPTOR POTENTIAL 6, phosphoribosylanthranilate isomerase 1 (.1.2.3.4.5) Potri.014G188400 [exp] 145 / 9e-44 AT5G05590 152 / 9e-47 phosphoribosylanthranilate isomerase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF00697 [flax] [poplar] PRAI N-(5'phosphoribosyl)anthranilate (PRA) isomerase
Representative CDS sequence Show only first row Show all	>Lus10007494 pacid=23176459 polypeptide=Lus10007494 locus=Lus10007494.g ID=Lus10007494.BGIv1.0 annot-version=v1.0 ATGTTGGTGGCTGGTGGCTCAGCAGGATTGTCCTCCATGGCAGGTGCAGGTATGAATGTCGAAAGACTGAACCTTGTGAATACGAGGTGTTGCTTAGGGA GCAGAATCACTAGCAGAGCTGCTTTATCAGAGAAAGCATCATTTTCTGTTGGGGAACATGATAAGAGTTCTTCACCATTGGTTAAAATGTGCGGAATAAC ATCAGCTAGAGATGCTGCAATGGCTGCAGAAGCTGGAGCTGATTTAATCGGGATGATTCTTTGGCCCAACTCCAAACGTTCAATTTCATCTTCTGTTGCA AAAGAAATTTCGAAAGTCGTGAGGGCAAATGGAGCACAGCCTGTTGGTGTATTTGTCGACGACGATGCAGATACAATAATGAGAGCAGCAGACATGGCTG ACCTTGAATTTGTACAGCTTCACGGGAACGGTTCAAGGGCAGCATTCCAACAACTGGCACAAGACAGACGAATAATCTACGTTCTTCATGCGAACAAAGA TGGCGAGCTTCTGAATCAAGTTTCAGAGGAAGAATGTTCTTTGGTCGACTGGATACTTGTCGATAGTGCAACCGGGGGCAGTGGCAAGGGGTTCAACTGG GATCAGTTTCAGTTACCACCAATCCGAAGCAAGCACGGGTGGCTCCTAGCTGGAGGAATAAACCCAGAGAACGTTTCTGAAGCACTGACGATCTTGAAGC CTGACGGTATAGATGTTAGCAGCGGCATTTGTGGCTCAGATGGCATTAACAAGGAGCAAGCCAGGATATCTTCCTTCATGAGTTCTGTACGTTCCATAAG CTATTGA
AA sequence Show only first row Show all	>Lus10007494 pacid=23176459 polypeptide=Lus10007494 locus=Lus10007494.g ID=Lus10007494.BGIv1.0 annot-version=v1.0 MLVAGGSAGLSSMAGAGMNVERLNLVNTRCCLGSRITSRAALSEKASFSVGEHDKSSSPLVKMCGITSARDAAMAAEAGADLIGMILWPNSKRSISSSVA KEISKVVRANGAQPVGVFVDDDADTIMRAADMADLEFVQLHGNGSRAAFQQLAQDRRIIYVLHANKDGELLNQVSEEECSLVDWILVDSATGGSGKGFNW DQFQLPPIRSKHGWLLAGGINPENVSEALTILKPDGIDVSSGICGSDGINKEQARISSFMSSVRSISY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07780		TRP6, PAI1	TRANSIENT RECEPTOR POTENTIAL 6...		Lus10007494 [exp]	0	1
AT3G51010			unknown protein		Lus10042347 [exp]	9.8	0.8701
AT2G37400			Tetratricopeptide repeat (TPR)...		Lus10024433 [exp]	10.0	0.8490
AT1G02140		MAGO, HAP1, MEE...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10029791 [exp]	12.8	0.8480
AT2G39020			Acyl-CoA N-acyltransferases (N...		Lus10023533 [exp]	15.5	0.8492
AT5G40510			Sucrase/ferredoxin-like family...		Lus10022274 [exp]	17.5	0.8090
AT4G22720			Actin-like ATPase superfamily ...		Lus10013054 [exp]	18.0	0.8036
AT3G18790			unknown protein		Lus10023225 [exp]	18.0	0.8471
AT3G11400		ATEIF3G1, EIF3G...	eukaryotic translation initiat...		Lus10030482 [exp]	20.9	0.8521
AT5G47660	Trihelix		Homeodomain-like superfamily p...		Lus10039080 [exp]	21.0	0.8156
AT3G01820			P-loop containing nucleoside t...		Lus10035224 [exp]	23.4	0.7791

Compare expression of checked genes

Lus10007494 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.