Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11150 147 / 3e-40 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028972 [exp] 309 / 1e-104 AT3G11150 176 / 3e-53 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10023311 [exp] 54 / 1e-07 AT1G30040 381 / 6e-133 GIBBERELLIN 2-OXIDASE 2, gibberellin 2-oxidase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G069800 [exp] 215 / 2e-66 AT3G11150 263 / 4e-85 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007495 pacid=23176520 polypeptide=Lus10007495 locus=Lus10007495.g ID=Lus10007495.BGIv1.0 annot-version=v1.0 ATGGCCTCCTCCTCTTCTCTTTCCGCCGCTCAAGAGCAACACCACCAACCAAACCCCTACTCCGCCGCCGCAACGTCAGCACCGCCGCCGACACCCTCAG CACAACGTCACAACACTAGCACGACTTCAGCACAACCTCACAACACCACCAACAGCCACGCCCCCGACAACATATCCACGTCAGCAGCCGTAGCAGCCGA CACACTTTCCCGTCTCCTCAACCGCCTACCCGCCCCATCTCTCTCACTTCCCTCCCGCCGCCGCCCCTCCCCGCTCTCATCCTCCTCCTCCACCGGCACG TCATCATCAATTTCCCCTCCCGTCATCTCCCTCTCCAATGACGCCGACATCCAATCTTCCTTACTGTCGGCTGCATCCGAACACGGATTCTTCCAGCTCA CCACCCACAAAATCCTGTCTCAACTCGCCAACTCGGCCGAGTCGGAAGCGCTCGCTCTCTTCCACCTCCCCGACGACCAAAAGGAAATGCACTTCCCTAG GAAGTGGCCTCTCGGCTACGAGGCCGACGAGGACGGAAACAACGGTGGCGCTTCGTTTTGGCTGGACTCAGCCGACAATGACACGTCGTCTATGACGAGT TCGTTGCTGGAGCTGACTCGGGCGATTGAAGGAGTCGGTTTACAGGTGATACGGATGCTTGCCCGGGCAGTCGGGTTCGAGAACCCGAAAAACCGGGTTT GCTCCATGATGGTGGTGAGCGACGGCGAGGAAAGGGGTTCGGGTTCGGGCGGCGGATTTTACCCGTATGTGGTGGGGTTGCAGTACCAAATAAGGAGGCA GAAGCATTGCTTGCTGGGGGATTCCGGGTCCGGGTCATGGGTAACGGTGCTGCCCGAGGTGGAGTCGGTTCTGGTGACCGTGGGTGACATCGGGCAGGTA TGGAGTAATGGAAAGCTAAAGAAAGTGAGAGGGATGGGACTGGGGAGTTTGGAACAAGGATCAATCGACAACAACAAAAGTACATTGTCATCATCGTCGT CAAGGAGACGCATATCAATGAGAGTGTTGATCACTCTTCCACTTGAAGACACAATCTCTCCTCTGGTTTCTTCTAAGCTAGCTGCAGAATCTGAAGAAGA AGAAGAGGTGAAGTTCAGGTCATTTGGGATGGAGGATTATGCTTGGAGAGTTTACCATGAGCCATTTATCTTCAAGGACCCACTTCACAGATATCGCTCC TCTCTTTAG
AA sequence Show only first row Show all	>Lus10007495 pacid=23176520 polypeptide=Lus10007495 locus=Lus10007495.g ID=Lus10007495.BGIv1.0 annot-version=v1.0 MASSSSLSAAQEQHHQPNPYSAAATSAPPPTPSAQRHNTSTTSAQPHNTTNSHAPDNISTSAAVAADTLSRLLNRLPAPSLSLPSRRRPSPLSSSSSTGT SSSISPPVISLSNDADIQSSLLSAASEHGFFQLTTHKILSQLANSAESEALALFHLPDDQKEMHFPRKWPLGYEADEDGNNGGASFWLDSADNDTSSMTS SLLELTRAIEGVGLQVIRMLARAVGFENPKNRVCSMMVVSDGEERGSGSGGGFYPYVVGLQYQIRRQKHCLLGDSGSGSWVTVLPEVESVLVTVGDIGQV WSNGKLKKVRGMGLGSLEQGSIDNNKSTLSSSSSRRRISMRVLITLPLEDTISPLVSSKLAAESEEEEEVKFRSFGMEDYAWRVYHEPFIFKDPLHRYRS SL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11150			2-oxoglutarate (2OG) and Fe(II...		Lus10007495 [exp]	0	1
AT1G62422			unknown protein		Lus10031521 [exp]	8.6	0.8951
AT1G79840	HD	GL2	GLABRA 2, HD-ZIP IV family of ...		Lus10037554 [exp]	14.1	0.8197
AT1G02260			Divalent ion symporter (.1)		Lus10027497 [exp]	14.8	0.8907
AT3G19290	bZIP	AREB2, ABF4	ABA-RESPONSIVE ELEMENT BINDING...		Lus10014066 [exp]	18.4	0.8927
AT3G04070	NAC	ANAC047	NAC domain containing protein ...		Lus10006547 [exp]	20.7	0.8165
AT3G20015			Eukaryotic aspartyl protease f...		Lus10010157 [exp]	21.5	0.8822
AT1G60420			DC1 domain-containing protein ...		Lus10013017 [exp]	30.5	0.8839
AT2G16750			Protein kinase protein with ad...		Lus10014122 [exp]	31.8	0.8841
AT1G05450			Bifunctional inhibitor/lipid-t...		Lus10021911 [exp]	36.1	0.8727
AT2G47730		GST6, ATGSTF5, ...	Arabidopsis thaliana glutathio...		Lus10030414 [exp]	37.1	0.8819

Compare expression of checked genes

Lus10007495 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.