Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08340 369 / 7e-126 Nucleotidylyl transferase superfamily protein (.1.2) AT5G23330 338 / 3e-114 Nucleotidylyl transferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028973 [exp] 676 / 0 AT5G08340 412 / 1e-143 Nucleotidylyl transferase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G075500 [exp] 405 / 1e-139 AT5G08340 424 / 5e-148 Nucleotidylyl transferase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF06574 [flax] [poplar] FAD_syn FAD synthetase
Representative CDS sequence Show only first row Show all	>Lus10007496 pacid=23176460 polypeptide=Lus10007496 locus=Lus10007496.g ID=Lus10007496.BGIv1.0 annot-version=v1.0 ATGATGTTGGTGGGAGGTGGCTCTCGTATTTCACACCACTTATGGGAGTGTAACCACCGGAATCAGTACTCTAGGGATACTCAGCATGCACTTGCAGCAG GATTGGGATTTTGCAGCTCTAGAATTGTTCAGTTCTCTTCTCTTGTATTCAAACCTGACTCCACTGATGTAGTGGGTGGCAGCAGCTGCTACCGGCATGC AATTCAGCCGAGAATCCGTTTGTTCTCAACCCTCCGATCGAAGTCTCCTGGCGAAATTCCGTTCGTAGCTGATTGTTTCAGACTTGATCCTGCTTTTTCT CTATTGGCTTTTGGTGCAACATGTTTGATGTGTTGTTATAATGTTCCTGTGTTTGGTCAAGTGGCTGATGACTTTTCTTTATGCAAAGCGAACGAGAAGA TGATTGCAAGCACCTCTCTGAAGGATTGTCCTCCGTTGCAGTGTTTCTGTCTTGAGCAGAATGATCCTGGAGGAATAGTAGCATTAGGAAAGTTTGAAGC TCTTCACATTGGCCATAGAGAACTTGCAGTTCAAGCATCAAGGATTGGAGTTCCATATCTACTATCCTTTGTAGGAATGGCTGAAGTACTTGGTTGGGAA CCAAGGGCTCCGATAGTTGCAAAATGTGACCGGCACAGAGTCCTCTCGTCTTGGGCACCCTACTGCGGAAACGTACTCCCAGCAGAATTCCAAGTAGAAT TCTCAAACGTCCGGCATCTGACTCCCCGACAGTTTGTCGAGAAGCTATGCAAGGAGCTCGAGGTGACCGGGGTTGTGGCAGGCGATAACTATTGCTTTGG ATATAAAGCTGCTGGCGACACATCCGAACTCATGCGCCTGTGCAAAGAATTCGGAATCCAGGCTTGCATCATAAATTCCGTCATGGACAAGCATCAAGAT CCTTCAAAATTCGACCTCAACGACTTCAAAGACAAAGGACAAGTCTCGTCTACTCGAGTTCGTCATGCTTTAGCCGCAGGGGACATGGAATACGTGACCG AATTGCTAGGTCGCAGGCATCGACTAATGTTAACCCTTGAAGAACAACAGAAGGGGTTTGCTAGTAGTGATTCCACTAGATGGAAGGTCTCCGCCCCGAG ATCTTGCCTCTTGAATCTCCCGCCAAAAGACGGGTTTTATGAAAACTGTTCCCTTTTCCTCGGTGAGGAAGACGAGGTAGGGATGCGATGTAGAGTGTTG ATCGACTCAAGACGTATCCATTTAGAGGTAGGGGATGCAGTAGGTTTTGATAGCTACGGTAGTAGTAAAAGCTTGAAGCGTGTAGGCATTGAGTTTGGCG ATTAA
AA sequence Show only first row Show all	>Lus10007496 pacid=23176460 polypeptide=Lus10007496 locus=Lus10007496.g ID=Lus10007496.BGIv1.0 annot-version=v1.0 MMLVGGGSRISHHLWECNHRNQYSRDTQHALAAGLGFCSSRIVQFSSLVFKPDSTDVVGGSSCYRHAIQPRIRLFSTLRSKSPGEIPFVADCFRLDPAFS LLAFGATCLMCCYNVPVFGQVADDFSLCKANEKMIASTSLKDCPPLQCFCLEQNDPGGIVALGKFEALHIGHRELAVQASRIGVPYLLSFVGMAEVLGWE PRAPIVAKCDRHRVLSSWAPYCGNVLPAEFQVEFSNVRHLTPRQFVEKLCKELEVTGVVAGDNYCFGYKAAGDTSELMRLCKEFGIQACIINSVMDKHQD PSKFDLNDFKDKGQVSSTRVRHALAAGDMEYVTELLGRRHRLMLTLEEQQKGFASSDSTRWKVSAPRSCLLNLPPKDGFYENCSLFLGEEDEVGMRCRVL IDSRRIHLEVGDAVGFDSYGSSKSLKRVGIEFGD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08340			Nucleotidylyl transferase supe...		Lus10007496 [exp]	0	1
AT5G17790		VAR3	VARIEGATED 3, zinc finger (Ran...		Lus10003872 [exp]	11.9	0.7693
AT2G45630			D-isomer specific 2-hydroxyaci...		Lus10041392 [exp]	32.2	0.7484
AT3G11640			unknown protein		Lus10016965 [exp]	36.4	0.7487
AT5G15390			tRNA/rRNA methyltransferase (S...		Lus10032993 [exp]	38.7	0.7500
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10019694 [exp]	41.4	0.7448
AT2G32040			Major facilitator superfamily ...		Lus10010565 [exp]	47.6	0.7246
AT4G32915			unknown protein		Lus10037623 [exp]	57.7	0.7335
AT3G44900		ATCHX4	cation/H+ exchanger 4, cation/...		Lus10013423 [exp]	70.4	0.7326
AT3G11640			unknown protein		Lus10016964 [exp]	101.5	0.7334
AT2G24120		PDE319, SCA3	SCABRA 3, PIGMENT DEFECTIVE 31...		Lus10010770 [exp]	107.7	0.7225

Compare expression of checked genes

Lus10007496 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.