Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55990 629 / 0 TBL29, ESK1 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) AT2G40150 567 / 0 TBL28 TRICHOME BIREFRINGENCE-LIKE 28 (.1) AT2G40160 442 / 1e-153 TBL30 Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT5G01360 363 / 1e-122 TBL3 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT3G11030 357 / 1e-119 TBL32 TRICHOME BIREFRINGENCE-LIKE 32 (.1) AT2G40320 338 / 1e-112 TBL33 TRICHOME BIREFRINGENCE-LIKE 33 (.1) AT1G73140 330 / 8e-110 TBL31 Plant protein of unknown function (DUF828) (.1) AT5G01620 316 / 1e-103 TBL35 TRICHOME BIREFRINGENCE-LIKE 35 (.1.2.3) AT2G38320 298 / 4e-97 TBL34 TRICHOME BIREFRINGENCE-LIKE 34 (.1) AT5G58600 244 / 3e-76 TBL44, PMR5 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028974 [exp] 833 / 0 AT3G55990 678 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10030396 [exp] 641 / 0 AT3G55990 684 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10027813 [exp] 375 / 5e-127 AT5G01360 570 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10005042 [exp] 368 / 3e-124 AT5G01360 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10009839 [exp] 347 / 8e-116 AT2G40320 678 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Lus10040953 [exp] 345 / 3e-115 AT2G40320 675 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Lus10028141 [exp] 323 / 9e-107 AT1G73140 563 / 0.0 Plant protein of unknown function (DUF828) (.1) Lus10042845 [exp] 321 / 8e-106 AT1G73140 559 / 0.0 Plant protein of unknown function (DUF828) (.1) Lus10022676 [exp] 316 / 5e-104 AT2G38320 545 / 0.0 TRICHOME BIREFRINGENCE-LIKE 34 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G069900 [exp] 669 / 0 AT3G55990 686 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.010G187600 [exp] 662 / 0 AT3G55990 660 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.010G187500 [exp] 553 / 0 AT3G55990 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.010G187300 [exp] 506 / 5e-178 AT3G55990 511 / 3e-179 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.008G070000 [exp] 496 / 3e-174 AT3G55990 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.016G119100 [exp] 390 / 7e-133 AT5G01360 578 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Potri.008G070200 [exp] 387 / 5e-132 AT3G55990 430 / 3e-148 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.008G073300 [exp] 356 / 8e-120 AT2G40320 694 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Potri.010G184000 [exp] 346 / 1e-115 AT2G40320 692 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Potri.001G376700 [exp] 342 / 3e-114 AT1G73140 640 / 0.0 Plant protein of unknown function (DUF828) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10007497 pacid=23176529 polypeptide=Lus10007497 locus=Lus10007497.g ID=Lus10007497.BGIv1.0 annot-version=v1.0 ATGCAGCCTGCGACGACAGTCCGGAGGAAATCCTACCACCACCACTTCTCCTCGCTGAAAACGGCGGCGATGAAGCACAGGATGAAGAACAACAGCAACC TCTCTGTTTTTGTCGTCGTCTCCTCTGTTTTCCTGTTTGGTGTTTTCATGTACAACGAAGACGTCAAGTCAATCGCCGAGTTCCCCTTCTCTTGGCCCAC TACTTTTTCAGATCCTTCCTTCGAACTCGCCAAGTCAGCCGCCGAGTTCGACGCGATGGTACATGCAGAGGAGGAAAGAGACATGGCGGAGGTGGAACTC CCTCCTGAAGATTGCGATTTGTTCACTGGCAATTGGGTTCTGGATAATTCGACTCACCCTTTGTACAAAGAGGAAGAATGTGAGTTCTTGACTGCTCAGG TGACTTGTATGAGGAATGGGAGGAAGGATTCGCTTTACCAGAACTGGAAATGGCAGCCCAGAGACTGTTCTTTGCCCAAGTTCAGGGCGAGGCTGCTGTT GAAGAAGCTGAGGAACAAGAGGCTGATGTTTGTCGGGGACTCGTTGAACAGGAACCAGTGGGAGTCGATGATTTGTTTGGTTCAGTCTGTGATTCCTCCT GGGAGGAAAAGCTTGAACAAGACTGGTTCTTTGGCTGTCTTCAGAATTGAGGACTACAACGCAACGGTGGAGTTCTACTGGGCGCCGTTCCTGGTGGAGT CGAACTCGGATGATCCGACGATGCACAGCATCCTGAACAGGATCATAATGCCGGAATCGATAGACAAGCATGGGCAGAATTGGAAGAACGTGGATTACCT CATCTTCAACACCTACATTTGGTGGATGAACACCTTCTCCATGAAAGTCCTCCGGGGATCTTTCGACCAGGGAGCGACGGAGTATGATGAAGTCGACCGG CCAGAAGCGTACCGGAGAGTGATGAATACATGGTCCAAGTGGGTTGATCAGAATGTGGATCCTAATCGGACCATGGTCTTCTTCAGCAGCATGTCCCCAC TTCATATCAAGAGTGAGGATTGGGAGAATCCAAATGGGATAAAATGCGCTAAAGAAACGAAGCCGATTCTAAATCTGTCGATGCCACTAGAGGTGGGGAC GGACAGACGACTATTCACCGTGGCGTCGAACGTGACGACAGAGATGAAAGTGCCGGTACACTTCATAAACATAACGAGATTGTCGGAATATCGTAAAGAC GCGCACACGTCGGTGTACACAATCCGACAAGGGAAGATGCTGACGACAGAGCAGAAGGCGGATCCAGCAACGTATGCTGACTGTATCCATTGGTGTCTTC CTGGATTGCCCGATACTTGGAACGAGTTCCTTTACACCCGAATCATTTCCCGCTTGTGA
AA sequence Show only first row Show all	>Lus10007497 pacid=23176529 polypeptide=Lus10007497 locus=Lus10007497.g ID=Lus10007497.BGIv1.0 annot-version=v1.0 MQPATTVRRKSYHHHFSSLKTAAMKHRMKNNSNLSVFVVVSSVFLFGVFMYNEDVKSIAEFPFSWPTTFSDPSFELAKSAAEFDAMVHAEEERDMAEVEL PPEDCDLFTGNWVLDNSTHPLYKEEECEFLTAQVTCMRNGRKDSLYQNWKWQPRDCSLPKFRARLLLKKLRNKRLMFVGDSLNRNQWESMICLVQSVIPP GRKSLNKTGSLAVFRIEDYNATVEFYWAPFLVESNSDDPTMHSILNRIIMPESIDKHGQNWKNVDYLIFNTYIWWMNTFSMKVLRGSFDQGATEYDEVDR PEAYRRVMNTWSKWVDQNVDPNRTMVFFSSMSPLHIKSEDWENPNGIKCAKETKPILNLSMPLEVGTDRRLFTVASNVTTEMKVPVHFINITRLSEYRKD AHTSVYTIRQGKMLTTEQKADPATYADCIHWCLPGLPDTWNEFLYTRIISRL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Lus10007497 [exp]	0	1
AT3G08500	MYB	ATMYB83	myb domain protein 83 (.1)		Lus10031850 [exp]	3.2	0.9715
AT5G67230		IRX14-L, I14H	IRREGULAR XYLEM 14-LIKE, IRREG...		Lus10011500 [exp]	3.2	0.9740
AT1G68200	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10035256 [exp]	3.9	0.9683
AT5G45370			nodulin MtN21 /EamA-like trans...		Lus10035693 [exp]	4.0	0.9586
AT1G09880			Rhamnogalacturonate lyase fami...		Lus10005979 [exp]	5.1	0.9616
AT2G14740		VSR2;2, BP80-2;...	VACUOLAR SORTING RECEPTOR 3, V...		Lus10002130 [exp]	6.0	0.9662
AT1G68200	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10034624 [exp]	6.7	0.9675
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10007584 [exp]	7.3	0.9649
AT1G17270			O-fucosyltransferase family pr...		Lus10003929 [exp]	7.5	0.9655
AT1G79620			Leucine-rich repeat protein ki...		Lus10021003 [exp]	7.7	0.9681

Compare expression of checked genes

Lus10007497 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.