Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05560 1765 / 0 EMB2771, APC1 EMBRYO DEFECTIVE 2771, E3 ubiquitin ligase, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028975 [exp] 3379 / 0 AT5G05560 1875 / 0.0 EMBRYO DEFECTIVE 2771, E3 ubiquitin ligase, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G070300 [exp] 2424 / 0 AT5G05560 1847 / 0.0 EMBRYO DEFECTIVE 2771, E3 ubiquitin ligase, putative (.1) Potri.010G187201 [exp] 44 / 6e-05 AT5G05560 67 / 4e-14 EMBRYO DEFECTIVE 2771, E3 ubiquitin ligase, putative (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007498 pacid=23176474 polypeptide=Lus10007498 locus=Lus10007498.g ID=Lus10007498.BGIv1.0 annot-version=v1.0 ATGCCGGTTGCAGCTCGGGAGCTCACCGTGCTCGGCGAGTTCAAGCCATTTGGCTTAATCGCCGAAGCTCTCGACGGAGGCAAGCCCCAAGACGGCGGAG GCAGTGTCTCCGATAAGTACGACTACTTCCTTTTCGACGCCGATACCGTCCGAGATGGAAATGGAGCCGATGACTCTACCGCTTCTGCTCTTAGCGATCG CTGTGACCACGAGCTGTTCATCAGGGGGAATAAGATCTTTTGGTCTACGGGAGCAAGAGTTTTCAAGAGATTCACGCTGCCATCGGCAGTTATCATGGCT TGCTGGTGTCGATTGGGGGAAGCATCTGAAGCATGCCTATGTATATTAGAAGCTGATACTCTAACAGTATATAGTATATCTGGTGAAGTGGTCTATGTCC CTCTCCCTTGCGCAATCGCATCAATATGGCCCCTTCCATATGGTTTGTTACTTCAGGCAGCTTCTGAAGGAAGTCGTCCAACACGTTCATCTCTCTCATC ATCGCATGATAGAATGTATCCAAAGAGAGACACAAGGTATTCTCCACAACAACGTTTCAGCGGTTACAGTCCATCTGTTTATGGTATCAACAACGTGGCA GTTACGATGTCCTCACATTTGATTCTGAAGGATCTGTTGGAAGAACCACAGCCAACGTGTGTAGAAGAGAAAGGAAAGTGGAACATTATGAAGGACCTTG AGGAGAGAACAATATGGACCAGCGACCAGGTTCCTTTGATGGCATCATTTAATCGAGGACAATCGCAGCACTCTGTTTGGGTTGCGGAAATAATCAATGA TAATCTTGAGGTGGTACATGGTAGCTCAACTGATGCAGTCCCTTGTACTCTATCTGCTAAACAAGTCTCCTTTCGAAGAATCTGGCAGGGGAGAGGTACC CGAACAGCTGCGTGTAAGGTTTTTCTTGCTACTGATGATGATGCTAGCCCCATTATTTGTTTTCTTCTTCAAGAGCAAAAGAAGCTATTGTCTTTGAGAC TTCAAACAATTGAAATCAATAATGAGACTGTCTTTGATATTAAATCCGACATGAGCTGGAGTATTCCCGCTATAGCAGCTGCTCCTGTGGTGGTGACACG TCCAAGAGTGAAAGTGGGACTGCTACCATATTCTGACATTATTGCTTTGGCCCCTGACAACACTCTTTCCCTTTATTCAGGGCAACATTGTCTGTGCAGA TATTCACTACCTCCATGCTTGGGTAAACTTCATCTTTCTTCTCAGTCAGAGCTCTCAAATACCATTTCTGTTCACCATGATTCGAAAGTTTTAGGACTGG CTGATGCTGTGGAGGGGCGTTTCAATCTTATAGTAAACAATGGACAGATGTTTCGATGTGTTCTTCGGAGTAGCCTTTCATCTGAATTGGTGAATGATTG CATCACTGTGATGGCTGATGGACTCTGTCCTAGCTTGTACAAACATTTCCTTCTTCTTCTATGGGGTGATGGTGATTCTGACTATTCGATGAGTGGCAAG TGTAGTCTACACTCTGAATGGGATTCATTCTGTGCCATCATACTCAGACTTTGCGGGGAATCTGGTTCTGTTAAGTGTGTTAAGCCACCACAAGCTTCAT CTTGGGAATTCCTTGTGAACAGCAACTTCCACAAGAATTATCGGAAAGTTAGTGTAAGTGGTGGATTTTCCTGTGTGTCTCTTGATGTGGAAAAATTGCC CTCCCAGGGATCAATTGCGGAAGGAAAATGTAGTTTGCCGAACTCTATCTCTTTTGAGCTATTAAGGGAGACTTTGGGTTGCCTCCATGCACTCTACGAG ACTCTAAAATTGGATAGTCTACGACAAAGAGATTTGGAGCTTCTGGTGGTCCTATTATGCAACATTGCTGCATTTCTTGGACAAGAAGGTTATTTAGATC ATTATATCCGTGATTTTCCTGGTCTTGAAAAGCAAATCGAGAGACGTGTTACGTCTTCTTCTTGGACAACTCCTCCCAGTTTATTCAGATGGCTTGAACA GTGTTTGCAACATGGTTGTAAGTCAGCTAGTGCAAATGATCTTCCACCCCTGATTTGTAAAGATGGAAGTAATGTTGTGAGCTTGGCACGAAAGATAGTT TCCTTCTACAGTTTGTTATGTGGTGGTGAACAGATGGGTAAGAAGGTATCTTCTGGAGTTTACTGTAACATTGCTCCGGGTTCATCCTGTTCCACTGAGG AGCTGACTGTCTTGGCTATGGTCGGTGAAAGGTTTGGATTACAACAACTTGACACACTGCCTTCTGGTGTATCTTTACCCCTGCGACATGCACTGAGCAC TTCCCGGGAATCTCCACCTACAGATTGGCCCGCACCTGCATATATTCTTCTTGGGAGAGAAGATTTGGCTTTGTCACGTTTGGTTCCCTCCCGCAAATCT AAGGATCCTGGAAGCCGATCTGACATGAATTTAATATCAATGTCAACGCCTTACATGCTACATTTACATCCAGTGACCGTTTCTTCTACTGTTACTGAAA CCGTGGGATTAGAAAGTTCCAAATTGGAAAATACAACCTCTTCTGATGTGTCTGTGGTGGATGGGATGGAACATATCTTCTCCTCTAGCACTCAGTTACA TTATGGTCGTGATCTGCGATTGAATGAGGTAAGGCGTGTTCTATGCTCAGCTAGACCTGTCGCGATCCAAATATCTACATACCCCAATCCTTCGGACCAG GATATTCAACAGACTCAATTATGGCACCTTGCCCAACGAACCACTGCTCTTCCTCTTGGTCGCGGGGCATTCACTTTAGCAACCATATCTACCCTCTTAA CAGAGGAATTTGCTGTACCCAAGCTTGTTTTAGCAGGTCGGTTACCTGCCCAACAAAATGCAACTGTTAATCTAGATCCGAGTATCAGAAATATACAAGA GCTTAAATCATGGCCAGAGTTTCATAATGCTGTTGCTGCTGGACTACGGTTAGCCCCCCTCCAGGGTAAGGTGTCAAGAACATGGATAATGTACAACAAA CCGGAGGTACCAAATGTTGTCCATGCGGGACTTCTCCTTGCATTAGGTGTACATGGATATCTGCATGGGTTAACCATGTCAGACATATACAAGTATTTCA CACAGGAACATGAATGCACAACCATTGGACTATTGCTAGGGCTTGCAGCTTCCTATAGAGGAACTATGGAATCCTCTATATCAAAGTGTCTTTACTTTCA CATACCTGCTCGACAATCATCATCACTTGCAGAGTTGGAGTTACCTTCCCATCTTCAGTCAGCTGCTTTAGTATCAGTTGGATACCTCTTCGAGGGATCA GTGCACCCGCAAACAATGCAGATTCTCTTGGGTGAGATGGGTCGCAGAAGTTCCGGTGACAATGTACTTGAAAGGGAAGGTTATGCTGTAGCTGCTGGAT TCTCGTTGGGCCTAGTTGCCTTGGGTCGAGGAAATGATGCACTGGGTTTTGTGGACAGTTTGGTGGATAGGTTGTTCGACTATACTGGTGGCAAAGAACT TAACCATCAGGAAAGACCATTATCATTCAATGCTTTGGCAGATGAGTCCAACCGTGGTGCTGGGCAGATGATAGACGGAACTGCAGTTAGTATTGATGTT ACTGCACCTGGAGCTATCATTGCCCTTGCTTTAATGTTTTTAAAGACTGAATCAGAGGCCATTGTGTCAAGATTGTCTATTCCAAAAACCCACTATGAAC TGCAGTATGTGAGGCCGGACTTCATAATGCTTCGTGTCATTGCCCGGAATTTAATAATGTGGAGCAGGGTGCAGCCATCTAAGGATTGGATTCTGAACCA GATTCCCGAGATAATAGCAACTGGTGTCAAAGGCCTTGTAGATGACACTAGCAATATCGATGAGATGGATGCTGAAACATTTGTACAGGCATATGTCAAT ATAGTGGCTGGGACGTGTATTTCTCTTGGATTGAGATTTGCGGGTACAAGGGATGGAAATGCACAGGAACTTCTCTATGAATGTGCTCTGTACTTCTTGA ATGAGATAAAACCTGTTTGTGCTGCAAAAGCTAACAGCTTTTCCAAGGGCTTGTCACGCTATGTTGATAGGAGCACCCTGGAAATATGCCTCCACCTTGT TGTTCTTGCGTTGTCTGTGGTCATGGCTGGTTCTGGACATCTTCAAACATTTAGGTTGTTGAAGTTCCTTCGTGGCCGTAGCTCTCCAGATGGTCATACG AATTATGGCATTCAAATGGCTGTGAGCATGGCAATTGGGTTCTTGTTTCTTGGGGGAGGAATGCGCACATTTTCAACAAGCAATGGTGCTGTTGCCGCTT TGCTAATTTCTCTATACCCACGGTTGCCTACTGGACCAAATGACAATCGTTGCCACCTTCAGGCATTCAGACATTTATACGTCCTTGCTACTGAAGCTCG TTGGGTTCAGACTGTAGATGTTGACAGTGGCTTGCCTGTTTATGTCCCCATTGAAGTCTCCATCAAGGAGACTGAAAATTATTCAGAAACCACTTACAGC GAGGTCACACCATGTATTTTGCCGGAGCGTTCTATTTTGAAGAAGGTGTGCATTTGTGGTCCTAGATACTGGTCACAAAAAATCGAGCTTGTCCCTGAAG ATAAGCCTTGGTGGAGTTTCGGGGACAAGAATGGTCCTTTTAGTTCGGGTATTCTCTATGTAAAGCGCAAGGTGGGAGCTTGCTCGTATGTGGACGACCC CATTGGGCGGCAATCTTTGCTGTCTCGAGCAATGCACAAGGTTTTTGGCTTGAGTAGCGTCAAAGCTTGGGTGGGCAGCAACAACCGGCATGGCTCTCTT ACTGTTGATCAGTTGGTCAGTACATTCTCTTCTGATCCTAGTTTGATTGCCTTCGCACAACTCTGTTGTGATGCTTCTTGGAATAGCAGGTCCGATGTTG ACTTCCAGGAATTCTGCTTGCAAGTACTCTTCGAGTGCATTAGCAGAGACAGGCCAGCTCTTCTCCAGGTCTATTTGTCTTTATATACAACTCTAGCGTC CTTGGCCGAGCAAGTCAGCAACGGGACTCTCATTTTCAGAGACTCGCTTGCCATTTCTAGTCTCAAGCTTGCACTCACGTATAACGAAGCCGTAGCGAGA GGGAAGCTAACCACCAGGCAAGGCACCATCGTCCAGTCAACCTTCCTAGGCTCCCTAAAGAAGAGAATGGAAGGGCTACTGAACCACTCAGATGAACTGA AAAACGATCTACGTATCTACTTGAGCTCAGGAAGATGGCCGAATGTCCAACACAACTCCGTGCTTCTTTCATGGTATCTCCAGTGGTTTGGAGTGCCGTC CCCGTCGGTAATCAATGCCGCTACGGCGAAGTTGAAACCCAGGGGGCTGCCGCTGTCAGTCCCGTTGTTCCGGTTGTTGCTCCCCGGAACAGACCTCAGT GCAGTGAGCCGGATTGTTCAGCTGCTGTCTGTTCAAGAAGGTAGAATTTGA
AA sequence Show only first row Show all	>Lus10007498 pacid=23176474 polypeptide=Lus10007498 locus=Lus10007498.g ID=Lus10007498.BGIv1.0 annot-version=v1.0 MPVAARELTVLGEFKPFGLIAEALDGGKPQDGGGSVSDKYDYFLFDADTVRDGNGADDSTASALSDRCDHELFIRGNKIFWSTGARVFKRFTLPSAVIMA CWCRLGEASEACLCILEADTLTVYSISGEVVYVPLPCAIASIWPLPYGLLLQAASEGSRPTRSSLSSSHDRMYPKRDTRYSPQQRFSGYSPSVYGINNVA VTMSSHLILKDLLEEPQPTCVEEKGKWNIMKDLEERTIWTSDQVPLMASFNRGQSQHSVWVAEIINDNLEVVHGSSTDAVPCTLSAKQVSFRRIWQGRGT RTAACKVFLATDDDASPIICFLLQEQKKLLSLRLQTIEINNETVFDIKSDMSWSIPAIAAAPVVVTRPRVKVGLLPYSDIIALAPDNTLSLYSGQHCLCR YSLPPCLGKLHLSSQSELSNTISVHHDSKVLGLADAVEGRFNLIVNNGQMFRCVLRSSLSSELVNDCITVMADGLCPSLYKHFLLLLWGDGDSDYSMSGK CSLHSEWDSFCAIILRLCGESGSVKCVKPPQASSWEFLVNSNFHKNYRKVSVSGGFSCVSLDVEKLPSQGSIAEGKCSLPNSISFELLRETLGCLHALYE TLKLDSLRQRDLELLVVLLCNIAAFLGQEGYLDHYIRDFPGLEKQIERRVTSSSWTTPPSLFRWLEQCLQHGCKSASANDLPPLICKDGSNVVSLARKIV SFYSLLCGGEQMGKKVSSGVYCNIAPGSSCSTEELTVLAMVGERFGLQQLDTLPSGVSLPLRHALSTSRESPPTDWPAPAYILLGREDLALSRLVPSRKS KDPGSRSDMNLISMSTPYMLHLHPVTVSSTVTETVGLESSKLENTTSSDVSVVDGMEHIFSSSTQLHYGRDLRLNEVRRVLCSARPVAIQISTYPNPSDQ DIQQTQLWHLAQRTTALPLGRGAFTLATISTLLTEEFAVPKLVLAGRLPAQQNATVNLDPSIRNIQELKSWPEFHNAVAAGLRLAPLQGKVSRTWIMYNK PEVPNVVHAGLLLALGVHGYLHGLTMSDIYKYFTQEHECTTIGLLLGLAASYRGTMESSISKCLYFHIPARQSSSLAELELPSHLQSAALVSVGYLFEGS VHPQTMQILLGEMGRRSSGDNVLEREGYAVAAGFSLGLVALGRGNDALGFVDSLVDRLFDYTGGKELNHQERPLSFNALADESNRGAGQMIDGTAVSIDV TAPGAIIALALMFLKTESEAIVSRLSIPKTHYELQYVRPDFIMLRVIARNLIMWSRVQPSKDWILNQIPEIIATGVKGLVDDTSNIDEMDAETFVQAYVN IVAGTCISLGLRFAGTRDGNAQELLYECALYFLNEIKPVCAAKANSFSKGLSRYVDRSTLEICLHLVVLALSVVMAGSGHLQTFRLLKFLRGRSSPDGHT NYGIQMAVSMAIGFLFLGGGMRTFSTSNGAVAALLISLYPRLPTGPNDNRCHLQAFRHLYVLATEARWVQTVDVDSGLPVYVPIEVSIKETENYSETTYS EVTPCILPERSILKKVCICGPRYWSQKIELVPEDKPWWSFGDKNGPFSSGILYVKRKVGACSYVDDPIGRQSLLSRAMHKVFGLSSVKAWVGSNNRHGSL TVDQLVSTFSSDPSLIAFAQLCCDASWNSRSDVDFQEFCLQVLFECISRDRPALLQVYLSLYTTLASLAEQVSNGTLIFRDSLAISSLKLALTYNEAVAR GKLTTRQGTIVQSTFLGSLKKRMEGLLNHSDELKNDLRIYLSSGRWPNVQHNSVLLSWYLQWFGVPSPSVINAATAKLKPRGLPLSVPLFRLLLPGTDLS AVSRIVQLLSVQEGRI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05560		EMB2771, APC1	EMBRYO DEFECTIVE 2771, E3 ubiq...		Lus10007498 [exp]	0	1
AT2G05120			Nucleoporin, Nup133/Nup155-lik...		Lus10001170 [exp]	2.6	0.9597
AT5G51660		CPSF160, ATCPSF...	cleavage and polyadenylation s...		Lus10031111 [exp]	2.8	0.9573
AT4G23540			ARM repeat superfamily protein...		Lus10035446 [exp]	2.8	0.9568
AT5G05560		EMB2771, APC1	EMBRYO DEFECTIVE 2771, E3 ubiq...		Lus10028975 [exp]	3.0	0.9571
AT2G04235			unknown protein		Lus10025175 [exp]	6.2	0.9423
AT2G38770		EMB2765	EMBRYO DEFECTIVE 2765, P-loop ...		Lus10016352 [exp]	6.5	0.9538
AT5G51660		CPSF160, ATCPSF...	cleavage and polyadenylation s...		Lus10031692 [exp]	7.5	0.9520
AT3G06530			ARM repeat superfamily protein...		Lus10008676 [exp]	7.7	0.9543
AT3G19050		POK2	phragmoplast orienting kinesin...		Lus10027934 [exp]	7.9	0.9523
AT5G23880		ATCPSF100, EMB1...	ENHANCED SILENCING PHENOTYPE 5...		Lus10021705 [exp]	8.0	0.9396

Compare expression of checked genes

Lus10007498 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.