Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40190 726 / 0 LEW3 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1) AT1G78800 52 / 6e-07 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028977 [exp] 868 / 0 AT2G40190 751 / 0.0 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1) Lus10008976 [exp] 226 / 5e-72 AT2G40190 192 / 1e-59 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1) Lus10014773 [exp] 223 / 1e-68 AT2G40190 188 / 1e-55 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1) Lus10008975 [exp] 204 / 3e-64 AT2G40190 186 / 4e-58 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1) Lus10007909 [exp] 175 / 2e-53 AT2G40190 152 / 3e-45 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1) Lus10007501 [exp] 139 / 3e-39 AT2G40190 103 / 2e-26 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1) Lus10010207 [exp] 129 / 1e-35 AT2G40190 111 / 6e-30 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1) Lus10021233 [exp] 65 / 5e-13 AT2G40190 52 / 3e-09 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1) Lus10031614 [exp] 53 / 1e-08 AT2G40190 81 / 1e-20 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G095500 [exp] 765 / 0 AT2G40190 735 / 0.0 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1) Potri.015G093000 [exp] 249 / 4e-81 AT2G40190 248 / 2e-81 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1) Potri.011G109000 [exp] 49 / 6e-06 AT1G78800 663 / 0.0 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00534 [flax] [poplar] Glycos_transf_1 Glycosyl transferases group 1
Representative CDS sequence Show only first row Show all	>Lus10007500 pacid=23176512 polypeptide=Lus10007500 locus=Lus10007500.g ID=Lus10007500.BGIv1.0 annot-version=v1.0 ATGGCGACCGTCACTCTTCTCGCTCTATCTCTTCTCATTTCCCTCATCTTCTCCATCTTCTCCTTCATCGCCTTCCACATTCTCACCTCCCGCCGGAACC GCCAAAAATCCGTCGGTTTCTTCCATCCTTACACAAACGACGGCGGCGGCGGAGAACGCGTCTTATGGTGCGCAGTCAAAGCAATCCAGGAAGAAATCCC CGACCTCGATTGCATCGTCTACACTGGCGATCACGACGCCTCTCCTCAGTCCCTCCTCGCCCGCGCCACCGACCGATTCGGCGTCCAATTGCTCCGTCCG CCGAAGGCGGTCCATCTTCACCGGAGGAAATGGGTGGAGGAGTCCACTTATCCTCGATTCACCATGATCGGACAGAGCCTCGGTTCGATTCTACTGTCCT GGGAAGCTCTATCGAAGTTCACTCCTCTGTATTACTTCGATACCAGCGGGTACGCTTTCACTTACCCGATCGCTCGATTGTTCGGATGCAAAGTAGTTTG CTACACGCATTACCCGACAATCAGCTTGGATATGATCTCCCGCGTTCGTCGTCGGAGCTCCATGTATAATAATGACAACTCAATTGCTCGCAGTGGTTGG CTATCGCAGTGTAAGCTCGTGTATTACACTTTCTTCAGCTGGATGTATGGATTTGTAGGCTCTTGTGCACATTTGGCCATGGTGAACTCTTCCTGGACTC GATCTCACATTGAGAAGCTTTGGCGTATTGCTGACCGGATCAAGCGAGTCTATCCTCCTTGTGATACATCAGGGCTACAGATGCTTCCTCTGGAAAGACC GGCGGGAACTCCAGTGTTCATATCAGTAGCTCAGTTCCGTCCTGAGAAGGCGCATCCTCTGCAACTTGAAGCCTTCTCTCTTGCCCTTGCGAGGTTGGAT GCAGAGCTGCCAAGGCCAAAGCTCCAGTTTGTTGGTAGTTGCAGGAACAAAGCAGACGAGGAAAGACTGCAGAAATTGAAGGATAAAGCAATTGAACTGA AGGTAGATGGAGATGTGGAATTCCATAAGAATGTGATGTACAGGTTAGTGCCAATCACTGAAGCGAGGGACTTGATAAAGCTACTGGGAGGCGCTGTTTC AGGATTGCATTCTATGATAGACGAGCACTTCGGCATCAGTGTTGTTGAATACATGGCTGCAGGAGCCATACCAATAGCTCATAACTCAGCCGGTCCTAAA ATGGACATCGTGCTAGAAGAAGACGGGGAGCCGACAGGGTTCCTTGCAGAGACAGTGGAAGAGTTTGCAGACGCCATCCTCAGGGTCATAAAGATGTCGG AATCCGAGAGGCTCAAGATGGCTGCAGCCGCCAGGAGAAGGGCCGGCAAGTTTTCAGAACAAAGGTTTTACGAGGATCTCAAGACGGCCATTCGACCTGT ACTAGTACGAAGCGGTTCCACCACCAATACCAGATAA
AA sequence Show only first row Show all	>Lus10007500 pacid=23176512 polypeptide=Lus10007500 locus=Lus10007500.g ID=Lus10007500.BGIv1.0 annot-version=v1.0 MATVTLLALSLLISLIFSIFSFIAFHILTSRRNRQKSVGFFHPYTNDGGGGERVLWCAVKAIQEEIPDLDCIVYTGDHDASPQSLLARATDRFGVQLLRP PKAVHLHRRKWVEESTYPRFTMIGQSLGSILLSWEALSKFTPLYYFDTSGYAFTYPIARLFGCKVVCYTHYPTISLDMISRVRRRSSMYNNDNSIARSGW LSQCKLVYYTFFSWMYGFVGSCAHLAMVNSSWTRSHIEKLWRIADRIKRVYPPCDTSGLQMLPLERPAGTPVFISVAQFRPEKAHPLQLEAFSLALARLD AELPRPKLQFVGSCRNKADEERLQKLKDKAIELKVDGDVEFHKNVMYRLVPITEARDLIKLLGGAVSGLHSMIDEHFGISVVEYMAAGAIPIAHNSAGPK MDIVLEEDGEPTGFLAETVEEFADAILRVIKMSESERLKMAAAARRRAGKFSEQRFYEDLKTAIRPVLVRSGSTTNTR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10007500 [exp]	0	1
AT1G65410		ABCI13, TGD3, A...	TRIGALACTOSYLDIACYLGLYCEROL 3,...		Lus10020188 [exp]	6.2	0.8209
AT2G40090		ATATH9	ABC2 homolog 9 (.1)		Lus10040196 [exp]	13.0	0.8581
AT5G13430			Ubiquinol-cytochrome C reducta...		Lus10035118 [exp]	14.3	0.8709
AT4G33510		DHS2	3-deoxy-d-arabino-heptulosonat...		Lus10001002 [exp]	14.3	0.8207
AT5G03290		IDH-V	isocitrate dehydrogenase V (.1...		Lus10023192 [exp]	19.5	0.8656
AT3G52990			Pyruvate kinase family protein...		Lus10035581 [exp]	20.1	0.8704
AT3G07940			Calcium-dependent ARF-type GTP...		Lus10039538 [exp]	21.1	0.8069
AT1G73380			unknown protein		Lus10031887 [exp]	21.5	0.8238
AT2G22480		PFK5	phosphofructokinase 5 (.1)		Lus10012738 [exp]	21.8	0.8549
					Lus10024932 [exp]	23.7	0.8418

Compare expression of checked genes

Lus10007500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.