Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40200 159 / 3e-48 bHLH bHLH051 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G56770 116 / 7e-32 bHLH bHLH107 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT1G68810 111 / 1e-28 bHLH bHLH030 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G25710 106 / 5e-27 bHLH TMO5, BHLH32, bHLH032, ATAIG1 TARGET OF MONOPTEROS 5, basic helix-loop-helix 32 (.1) AT2G41130 95 / 1e-23 bHLH bHLH106 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G38070 86 / 6e-19 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G00050 58 / 9e-10 bHLH bHLH016, UNE10 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G16910 55 / 1e-08 bHLH AMS, bHLH021 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G32640 54 / 4e-08 bHLH JIN1, JAI1, ZBF1, RD22BP1, ATMYC2 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT4G28815 53 / 4e-08 bHLH bHLH127 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028978 [exp] 366 / 3e-130 AT2G40200 157 / 8e-48 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10042017 [exp] 129 / 3e-36 AT2G41130 204 / 2e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10018020 [exp] 128 / 8e-36 AT2G41130 206 / 1e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10041493 [exp] 114 / 3e-30 AT3G25710 201 / 2e-62 TARGET OF MONOPTEROS 5, basic helix-loop-helix 32 (.1) Lus10034271 [exp] 114 / 4e-30 AT1G68810 218 / 2e-68 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10021711 [exp] 113 / 2e-29 AT1G68810 310 / 1e-103 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10035056 [exp] 113 / 2e-29 AT1G68810 321 / 6e-108 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10013917 [exp] 108 / 2e-28 AT2G40200 122 / 2e-33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10001885 [exp] 102 / 4e-26 AT1G68810 124 / 1e-33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G070800 [exp] 248 / 3e-83 AT2G40200 132 / 2e-37 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G186700 [exp] 227 / 7e-75 AT2G40200 132 / 3e-37 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.006G037100 [exp] 116 / 7e-32 AT2G41130 229 / 2e-75 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G130000 [exp] 118 / 1e-31 AT1G68810 269 / 1e-87 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.008G116000 [exp] 114 / 4e-30 AT1G68810 259 / 5e-84 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G105300 [exp] 109 / 3e-29 AT3G56770 110 / 1e-29 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.016G035400 [exp] 108 / 8e-29 AT2G41130 231 / 2e-76 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.004G055700 [exp] 106 / 8e-28 AT2G41130 120 / 1e-32 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.019G089000 [exp] 105 / 2e-27 AT1G68810 122 / 2e-32 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.013G117600 [exp] 100 / 2e-25 AT3G56770 112 / 8e-30 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10007502 pacid=23176494 polypeptide=Lus10007502 locus=Lus10007502.g ID=Lus10007502.BGIv1.0 annot-version=v1.0 ATGGACTTTACTGACAATGGAGATGAATCATCATTCCCCTTTTCATGGTCCAACTGCAGTTTCTTCCCGGTCCATGAATCTGCAGAGGATAAAGCAGCTT CAAGCTCCAGAAGCCATAGCCAAGCTGAGAAGCGCAGGCGAGACAGAATCAACGCACAGCTCAGCACCCTAAGGAAACTAATTCCCAAATCTGACAAGAT GGACAAGGCGGCTCTGCTGGGAAGCGTGATCGAACAGGTGAGGGATCTGAAGAGCAAAGCTAACGAAGTGAAGAAGCAATTCGCTGTGCCATCAGAAATC GACGAGATCAACGTAGATTTCTGCGACGTAGGAGGAGGAGAGGAAAACAATAACGTGTTCTTCGTCAGAGCTAGTTTGACGTGTGAGGATCGGCCGGAGT TATTATCGGAGCTGATCCGGATGGTGAAAGGTCAGCGGTTGGAGATTGTACAAGCAGACATTACCAGCGTAGGCGGGAGAGTGAGAAGCGTCTTCGTGTT TTGTAACAACGGCGGTGGCGGAGGAGGAGCAGGGGGAAGTGTGGGAGACGGCGATAAGAGATCGGTTGTTAGCGGGATCAAACAGTCGCTTAACATAGTT CTGAGTAGAATAGCGTCGGCTACTGTGCCTTCCAGTTATCGTATTAGGAGCAAGCGGCAGCGGTTCTTTATGCCGTCGAATTGA
AA sequence Show only first row Show all	>Lus10007502 pacid=23176494 polypeptide=Lus10007502 locus=Lus10007502.g ID=Lus10007502.BGIv1.0 annot-version=v1.0 MDFTDNGDESSFPFSWSNCSFFPVHESAEDKAASSSRSHSQAEKRRRDRINAQLSTLRKLIPKSDKMDKAALLGSVIEQVRDLKSKANEVKKQFAVPSEI DEINVDFCDVGGGEENNNVFFVRASLTCEDRPELLSELIRMVKGQRLEIVQADITSVGGRVRSVFVFCNNGGGGGGAGGSVGDGDKRSVVSGIKQSLNIV LSRIASATVPSSYRIRSKRQRFFMPSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40200	bHLH	bHLH051	basic helix-loop-helix (bHLH) ...		Lus10007502 [exp]	0	1
AT1G27180			disease resistance protein (TI...		Lus10007831 [exp]	7.7	0.8966
AT1G56260		MDO1	MERISTEM DISORGANIZATION 1, un...		Lus10020669 [exp]	7.9	0.8962
AT2G01520		ZCE1, MLP328	\(Zusammen-CA\)-enhanced 1, ML...		Lus10028887 [exp]	11.0	0.8589
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10006084 [exp]	12.5	0.8899
AT5G22390			Protein of unknown function (D...		Lus10004863 [exp]	18.5	0.8649
AT3G02100			UDP-Glycosyltransferase superf...		Lus10015751 [exp]	18.7	0.8679
AT3G16500	AUX_IAA	IAA26, PAP1	indole-3-acetic acid inducible...		Lus10006842 [exp]	19.6	0.8172
AT5G10860		CBSX3	CBS domain containing protein ...		Lus10034441 [exp]	19.7	0.7877
AT4G37445			unknown protein		Lus10001408 [exp]	20.5	0.8781
					Lus10024445 [exp]	20.7	0.8535

Compare expression of checked genes

Lus10007502 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.