Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21945 42 / 4e-05 Receptor-like protein kinase-related family protein (.1) AT4G28670 42 / 6e-05 Protein kinase family protein with domain of unknown function (DUF26) (.1) AT3G21940 41 / 0.0002 Receptor protein kinase-related (.1) AT3G22040 41 / 0.0002 Domain of unknown function (DUF26) (.1) AT5G48540 40 / 0.0003 receptor-like protein kinase-related family protein (.1) AT1G70520 40 / 0.0004 ASG6, CRK2 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) AT3G60720 40 / 0.0005 PDLP8 plasmodesmata-located protein 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028980 [exp] 219 / 2e-73 AT3G21945 39 / 9e-04 Receptor-like protein kinase-related family protein (.1) Lus10040943 [exp] 154 / 2e-48 AT4G23180 39 / 9e-04 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10009833 [exp] 152 / 7e-48 AT4G23180 39 / 7e-04 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10011438 [exp] 53 / 2e-09 ND 35 / 0.004 Lus10012623 [exp] 52 / 5e-09 ND 38 / 0.001 Lus10015472 [exp] 52 / 9e-09 AT5G48540 42 / 4e-05 receptor-like protein kinase-related family protein (.1) Lus10028026 [exp] 50 / 5e-08 AT4G23290 44 / 1e-05 cysteine-rich RLK (RECEPTOR-like protein kinase) 21 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 21 (.2) Lus10026810 [exp] 50 / 7e-08 AT1G63600 41 / 1e-04 Receptor-like protein kinase-related family protein (.1) Lus10033389 [exp] 49 / 7e-08 AT1G19090 44 / 2e-05 CYSTEINE-RICH RLK \(RECEPTOR-LIKE PROTEIN KINASE\) 1, receptor-like serine/threonine kinase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G208400 [exp] 56 / 3e-10 AT5G48540 52 / 1e-08 receptor-like protein kinase-related family protein (.1) Potri.002G249600 [exp] 40 / 0.0002 AT5G48540 256 / 7e-86 receptor-like protein kinase-related family protein (.1) Potri.004G026200 [exp] 40 / 0.0003 AT4G05200 573 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.007G120600 [exp] 40 / 0.0003 AT3G22060 214 / 2e-69 Receptor-like protein kinase-related family protein (.1) Potri.011G027600 [exp] 40 / 0.0004 AT4G23280 461 / 3e-156 cysteine-rich RLK (RECEPTOR-like protein kinase) 20 (.1) Potri.011G030650 [exp] 40 / 0.0006 AT4G05200 476 / 1e-159 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G024900 [exp] 40 / 0.0006 AT4G23180 506 / 1e-171 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025900 [exp] 40 / 0.0006 AT4G23130 573 / 0.0 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) Potri.004G025425 [exp] 39 / 0.0007 AT4G21410 556 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G027900 [exp] 39 / 0.0008 AT4G23180 542 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10007504 pacid=23176515 polypeptide=Lus10007504 locus=Lus10007504.g ID=Lus10007504.BGIv1.0 annot-version=v1.0 ATGGCTCGCCTAGTGATGTTTGCCTTAGCCGCTACCGTCCTCGGATTACTAGCCACCGGCACCAACTCAACATCTCCATCTCCATCTCCATCTCCATCTC CATCGCCATTGCGAGCTCCATCTCCATCGCGGTCGCCTTCGAAATCACACTCTTCACACTCATCATCGCCGTCGCTCTCGCCGCTGCCTGCGGCGGCGGG AGTGGTGTGCAATGAGACGAGTTACACGAACGTGTACCCGATAGACAACTACGTGAAGCACGTGCTGGAGGAGCTGGGCGACGAAGTGAGCAACAGCAAG GGTTACGCGATGGCTATCAAGTTTCCGGAAATAGACAGGCCGATTATGATGGGACAGGGAGCCTGTACTAGGAACATGTCGGCGGCGGATTGCTCCGGCT GTCTTAAGGACGGGGCGAAGAAGGTAATTGCAGGGTGCCCTCACAAAGTTGGTGCTCGGTTCAACGCCACCGGGTGCAAATTACGGTACGACGTTTATCA GGATGTCGTCTAA
AA sequence Show only first row Show all	>Lus10007504 pacid=23176515 polypeptide=Lus10007504 locus=Lus10007504.g ID=Lus10007504.BGIv1.0 annot-version=v1.0 MARLVMFALAATVLGLLATGTNSTSPSPSPSPSPSPLRAPSPSRSPSKSHSSHSSSPSLSPLPAAAGVVCNETSYTNVYPIDNYVKHVLEELGDEVSNSK GYAMAIKFPEIDRPIMMGQGACTRNMSAADCSGCLKDGAKKVIAGCPHKVGARFNATGCKLRYDVYQDVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22040			Domain of unknown function (DU...		Lus10007504 [exp]	0	1
AT4G28530	NAC	ANAC074	NAC domain containing protein ...		Lus10024908 [exp]	1.7	0.7894
					Lus10021186 [exp]	16.1	0.6839
AT5G52210		ATGB1, ATARLB1	GTP-binding protein 1 (.1.2)		Lus10038871 [exp]	17.2	0.6686
AT5G53310			myosin heavy chain-related (.1...		Lus10039322 [exp]	20.7	0.6765
AT5G42930			alpha/beta-Hydrolases superfam...		Lus10009361 [exp]	23.5	0.6746
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10024162 [exp]	23.5	0.7206
AT5G12000			Protein kinase protein with ad...		Lus10006021 [exp]	23.9	0.7099
AT1G51200			A20/AN1-like zinc finger famil...		Lus10031833 [exp]	28.5	0.7051
AT3G50910			unknown protein		Lus10025996 [exp]	49.7	0.6609
AT1G34420			leucine-rich repeat transmembr...		Lus10009429 [exp]	50.5	0.6585

Compare expression of checked genes

Lus10007504 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.