Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007506 [exp] 138 / 2e-41 AT3G22040 39 / 5e-04 Domain of unknown function (DUF26) (.1) Lus10042124 [exp] 62 / 2e-11 AT3G58310 46 / 1e-05 Domain of unknown function (DUF26) (.1) Lus10007508 [exp] 58 / 2e-11 ND / Lus10002371 [exp] 56 / 3e-10 AT4G38830 37 / 0.001 cysteine-rich RLK (RECEPTOR-like protein kinase) 26 (.1) Lus10028981 [exp] 51 / 4e-08 ND 35 / 0.007 Lus10011040 [exp] 50 / 6e-08 AT3G21940 38 / 8e-04 Receptor protein kinase-related (.1) Lus10007507 [exp] 48 / 5e-07 ND / Lus10015682 [exp] 42 / 9e-05 ND 39 / 7e-04 Lus10028982 [exp] 42 / 0.0002 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G024900 [exp] 40 / 0.0009 AT4G23180 506 / 1e-171 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10007505 pacid=23176528 polypeptide=Lus10007505 locus=Lus10007505.g ID=Lus10007505.BGIv1.0 annot-version=v1.0 ATGGGTGGGAAGGAGAGATCGAGAGAGAAATTGAAGAAGTTATTGAATCTCGGCAATCTCCGACCATATGCAAATCTTTACATGTATAAACACACACAGA TTGAACATTTCCCACAAAGCATAAGATCAACGACAATTGTATTTCATACCATGAAGATAGCAGATCAGTTTACTACATCATCAATGGCGATTTTGGGATT GGCTATGATCACTATGGGGATTGTTATTGATGCAGGTTACGGAAACGACGACAACGACGACGTCGTCGTCTATAACAGTGACCAACCAGAAGGTTTCCAA TTGTACATGAACGTTACACCGTTCAACAGGAATGGAGACCCGGAGCTGGGAGAATGCACCGACCTTTTCAAGGAGTTGCTCCGAACCGGCAAGTTTTTGA GGAGCGGCGATTTCATAGACACCGTGGTAATCTGTCCCAACGGCGGGTTATCACCATCACCGCCGAGTCTTTATACAATGGTGCATTGTCGCGACCGGGA CAACTGCAACGGCTGTCTCCAAGATGCTGCTTCGGCGATGGACCAACACTGCGCCGACTGTTATGGGTTTCGTGCGTGGAGTGACGATTGCTGGGTGAGG TACGAGACTTACCGCTTCTTGTCGTTTGACTAG
AA sequence Show only first row Show all	>Lus10007505 pacid=23176528 polypeptide=Lus10007505 locus=Lus10007505.g ID=Lus10007505.BGIv1.0 annot-version=v1.0 MGGKERSREKLKKLLNLGNLRPYANLYMYKHTQIEHFPQSIRSTTIVFHTMKIADQFTTSSMAILGLAMITMGIVIDAGYGNDDNDDVVVYNSDQPEGFQ LYMNVTPFNRNGDPELGECTDLFKELLRTGKFLRSGDFIDTVVICPNGGLSPSPPSLYTMVHCRDRDNCNGCLQDAASAMDQHCADCYGFRAWSDDCWVR YETYRFLSFD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10007505 [exp]	0	1
AT2G27930			PLATZ transcription factor fam...		Lus10036044 [exp]	8.4	0.7153
AT5G28690			Protein of unknown function (D...		Lus10005536 [exp]	13.7	0.5676
AT3G63380			ATPase E1-E2 type family prote...		Lus10004087 [exp]	13.9	0.6828
AT2G23440			unknown protein		Lus10002969 [exp]	15.3	0.6820
AT5G63810		BGAL10	beta-galactosidase 10 (.1)		Lus10023977 [exp]	18.3	0.6810
AT1G21400			Thiamin diphosphate-binding fo...		Lus10000772 [exp]	20.7	0.6778
					Lus10000400 [exp]	22.0	0.6718
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Lus10026877 [exp]	23.8	0.6718
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10029390 [exp]	25.5	0.6718
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10029913 [exp]	27.0	0.6718

Compare expression of checked genes

Lus10007505 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.