Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22040 39 / 0.0004 Domain of unknown function (DUF26) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007505 [exp] 157 / 4e-49 ND 39 / 0.002 Lus10042124 [exp] 66 / 2e-13 AT3G58310 46 / 1e-05 Domain of unknown function (DUF26) (.1) Lus10002371 [exp] 62 / 5e-13 AT4G38830 37 / 0.001 cysteine-rich RLK (RECEPTOR-like protein kinase) 26 (.1) Lus10007508 [exp] 54 / 2e-10 ND / Lus10011040 [exp] 49 / 3e-08 AT3G21940 38 / 8e-04 Receptor protein kinase-related (.1) Lus10028981 [exp] 48 / 2e-07 ND 35 / 0.007 Lus10007507 [exp] 47 / 4e-07 ND / Lus10018377 [exp] 42 / 5e-05 AT4G05200 489 / 4e-164 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10010960 [exp] 42 / 7e-05 AT1G70520 373 / 2e-121 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G024900 [exp] 45 / 3e-06 AT4G23180 506 / 1e-171 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025900 [exp] 45 / 4e-06 AT4G23130 573 / 0.0 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) Potri.004G026000 [exp] 42 / 4e-05 AT4G05200 353 / 3e-116 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G025001 [exp] 42 / 4e-05 AT4G05200 465 / 4e-158 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.011G028400 [exp] 40 / 0.0002 AT4G05200 709 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.011G028100 [exp] 40 / 0.0004 AT4G05200 519 / 8e-177 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G026200 [exp] 39 / 0.0005 AT4G05200 573 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.011G028500 [exp] 39 / 0.0005 AT4G05200 160 / 4e-44 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G025425 [exp] 39 / 0.0007 AT4G21410 556 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.007G120401 [exp] 39 / 0.0007 AT3G22060 271 / 3e-92 Receptor-like protein kinase-related family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10007506 pacid=23176523 polypeptide=Lus10007506 locus=Lus10007506.g ID=Lus10007506.BGIv1.0 annot-version=v1.0 ATGAAGATAGCAAAGTTGACATCAATAGCACTATTCGTGGGATCGATTATCACTATCGGCTTGCGTATGCATCCAGCTGGTTACGAAAAAGATGACGTCG TCGTCACTGACCAATCGGGAGGTTTCCAGTACTTTTGGAACACTACGAACTTCCACGACCCGGTCCTGCACTACTGCACGGCGCTTTTCAACGAGATGCT CAAGGGTGGCGAGTTTCTGCAGAGCGCGCGCTTTCTGGACAATGTGATAACATGTCCCGACTATTACTTACCGCCGAATCTTTATACGATGGTGCATTGT CGCGACCGGGGCGAATGCAATCAGTGTCTCGAGAATGCTGCTTCATTGATGGACCAATGTTGCGTCGACTGTTACGGATTTCGCGCGTTGAGTGATGATT GTTGGGTGCGATATGAGACTTACAGCTTCTCGTCGTATAACTAG
AA sequence Show only first row Show all	>Lus10007506 pacid=23176523 polypeptide=Lus10007506 locus=Lus10007506.g ID=Lus10007506.BGIv1.0 annot-version=v1.0 MKIAKLTSIALFVGSIITIGLRMHPAGYEKDDVVVTDQSGGFQYFWNTTNFHDPVLHYCTALFNEMLKGGEFLQSARFLDNVITCPDYYLPPNLYTMVHC RDRGECNQCLENAASLMDQCCVDCYGFRALSDDCWVRYETYSFSSYN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22040			Domain of unknown function (DU...		Lus10007506 [exp]	0	1
AT3G43660			Vacuolar iron transporter (VIT...		Lus10015135 [exp]	1.0	0.8158
AT2G39530			Uncharacterised protein family...		Lus10031305 [exp]	6.2	0.7167
					Lus10000914 [exp]	7.5	0.7167
AT3G04290		ATLTL1, LTL1	Li-tolerant lipase 1 (.1)		Lus10036966 [exp]	8.9	0.7091
AT4G25350		SHB1	SHORT HYPOCOTYL UNDER BLUE1, E...		Lus10037146 [exp]	10.5	0.7020
AT5G59700			Protein kinase superfamily pro...		Lus10023324 [exp]	14.1	0.6352
AT2G38890			unknown protein		Lus10023488 [exp]	18.2	0.6565
AT3G11680			Aluminium activated malate tra...		Lus10013577 [exp]	22.8	0.5908
AT2G31960		ATGSL3, ATGSL03	glucan synthase-like 3 (.1.2)		Lus10003917 [exp]	23.4	0.6413
AT4G17810	C2H2ZnF	ZFP12	C2H2 and C2HC zinc fingers sup...		Lus10004578 [exp]	29.8	0.5988

Compare expression of checked genes

Lus10007506 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.