Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028981 [exp] 133 / 1e-40 ND 35 / 0.007 Lus10028982 [exp] 125 / 6e-37 ND / Lus10007508 [exp] 105 / 2e-30 ND / Lus10002371 [exp] 52 / 4e-09 AT4G38830 37 / 0.001 cysteine-rich RLK (RECEPTOR-like protein kinase) 26 (.1) Lus10042124 [exp] 53 / 8e-09 AT3G58310 46 / 1e-05 Domain of unknown function (DUF26) (.1) Lus10007506 [exp] 47 / 3e-07 AT3G22040 39 / 5e-04 Domain of unknown function (DUF26) (.1) Lus10007505 [exp] 48 / 4e-07 ND 39 / 0.002 Lus10022828 [exp] 45 / 2e-06 AT2G01660 43 / 2e-05 plasmodesmata-located protein 6 (.1.2) Lus10011894 [exp] 43 / 1e-05 AT3G60720 38 / 9e-04 plasmodesmata-located protein 8 (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10007507 pacid=23176519 polypeptide=Lus10007507 locus=Lus10007507.g ID=Lus10007507.BGIv1.0 annot-version=v1.0 ATGGCTGGAAGACGGTTGGAGCTCTCAACAACGACAACGGCAGACGTTGGGTTCATCATCATCATCGCCGTCGCGCTGTTTGGGATACGAGGCAAGGCCG AATACGACAAAGGTTTCGAATACCGATGTAATCTGACCAGGTTCAACCCGGTGAGAGACAGGGTAATGTATCAAGCTGTCTTGACATTTACCTACTTGGT TGCGGATCGTACGACGTACGTTGACCAACCGGGGAACCGAGACGGTTTAATCGCTTACGGTTCGGGTGAGAGGTGGATCTACACTTGGGTCCACTGTGGA TCTTATATAGCGTGCCCAGACTGTCTCCAGGCTGCTGCATCGATCGCGAAGGAATCTTTTACTCATTCATACGGAGTTGATGTCATCAATAACGACTGCG AGATTCGGTACGAGACTTACCAATTTTAG
AA sequence Show only first row Show all	>Lus10007507 pacid=23176519 polypeptide=Lus10007507 locus=Lus10007507.g ID=Lus10007507.BGIv1.0 annot-version=v1.0 MAGRRLELSTTTTADVGFIIIIAVALFGIRGKAEYDKGFEYRCNLTRFNPVRDRVMYQAVLTFTYLVADRTTYVDQPGNRDGLIAYGSGERWIYTWVHCG SYIACPDCLQAAASIAKESFTHSYGVDVINNDCEIRYETYQF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10007507 [exp]	0	1
AT5G62850		ATVEX1, SWEET5,...	VEGETATIVE CELL EXPRESSED1, No...		Lus10002364 [exp]	4.7	0.9577
AT2G36780			UDP-Glycosyltransferase superf...		Lus10023894 [exp]	7.8	0.8704
AT1G30050			unknown protein		Lus10035609 [exp]	10.4	0.9389
AT3G03080			Zinc-binding dehydrogenase fam...		Lus10003638 [exp]	12.6	0.9380
					Lus10005830 [exp]	15.7	0.9303
AT2G32360			Ubiquitin-like superfamily pro...		Lus10015125 [exp]	16.9	0.9260
					Lus10009618 [exp]	17.6	0.9303
AT4G03220			Protein with RNI-like/FBD-like...		Lus10023567 [exp]	19.3	0.9303
AT1G75790		SKS18	SKU5 similar 18 (.1)		Lus10013556 [exp]	20.8	0.9303
AT1G78610		MSL6	mechanosensitive channel of sm...		Lus10012516 [exp]	20.9	0.8404

Compare expression of checked genes

Lus10007507 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.