Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40230 482 / 6e-168 HXXXD-type acyl-transferase family protein (.1) AT1G27620 298 / 6e-96 HXXXD-type acyl-transferase family protein (.1) AT3G48720 186 / 2e-53 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT5G41040 183 / 3e-52 HXXXD-type acyl-transferase family protein (.1.2) AT5G63560 182 / 1e-51 HXXXD-type acyl-transferase family protein (.1) AT1G03390 168 / 2e-46 HXXXD-type acyl-transferase family protein (.1) AT3G03480 160 / 1e-43 CHAT acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase (.1) AT5G07080 160 / 2e-43 HXXXD-type acyl-transferase family protein (.1) AT5G48930 146 / 1e-38 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) AT3G47170 146 / 3e-38 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028983 [exp] 726 / 0 AT2G40230 492 / 7e-173 HXXXD-type acyl-transferase family protein (.1) Lus10024278 [exp] 262 / 2e-81 AT1G27620 550 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10012552 [exp] 190 / 8e-55 AT5G41040 642 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10032554 [exp] 190 / 9e-55 AT5G41040 640 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10043189 [exp] 189 / 2e-54 AT5G41040 635 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10017744 [exp] 174 / 3e-48 AT1G03390 643 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10033079 [exp] 174 / 3e-48 AT1G03390 643 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10032020 [exp] 172 / 9e-47 AT5G41040 443 / 2e-151 HXXXD-type acyl-transferase family protein (.1.2) Lus10032019 [exp] 167 / 4e-46 AT5G41040 446 / 1e-154 HXXXD-type acyl-transferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G071200 [exp] 528 / 0 AT2G40230 544 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.010G186300 [exp] 523 / 0 AT2G40230 576 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.002G032200 [exp] 296 / 5e-95 AT1G27620 614 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.005G230900 [exp] 293 / 5e-94 AT1G27620 607 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.015G100800 [exp] 194 / 2e-56 AT5G41040 644 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.001G326300 [exp] 184 / 1e-52 AT5G41040 677 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.006G157100 [exp] 183 / 7e-52 AT1G03390 627 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.006G158400 [exp] 183 / 9e-52 AT1G03390 625 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.017G068500 [exp] 171 / 7e-48 AT5G41040 583 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.019G003000 [exp] 169 / 9e-47 AT5G17540 480 / 9e-168 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10007509 pacid=23176489 polypeptide=Lus10007509 locus=Lus10007509.g ID=Lus10007509.BGIv1.0 annot-version=v1.0 ATGCCCGCAACAGAATCTTTTGTACAAATCTTTCTCACTGCACAGTCTGGCAGGCTGGTCCCCCCATTCAACATTATATACATATCCCCACCATACCCAA CACATCTTTCCCGCACCAGAAGGTTCTCCCCCCCTCCTCCTCCGCAGATGGCCAACGACGACGACGACAACAACAACGTTGCAGCAGCTTCTCCTTCCTC CGTGAACATCAAAGAAGCAACCGTCATCAAACCCTCCAATCCGACGCCGTCTTGTATCCTCCCTCTCTCCTCCCTCGACTCCCAACTCTTCCTCCGCTTC ACCATCGAGTATCTCTTCGTCTTCAACACCTCCTCAAACGGCGTCGTCTTGCAACGCCCCCTCTTCACAAACCGGCTTAAACTCGCCTTGTCAAACATTC TCGTCCCTTACTACCCCTTAGCCGGACGAGTCCGGTTCAGCCACTTCAATGGCTCTTCTTCCAACAACCACCTCGAAGTCAACTGCCAGTCACAAGGCGC ACTATTCGTCGAAGCGGAATCTGATTCGTTCCGGTTGACGGAATTCGACGGCCGACAGCCGAACTCTGTCAGCCAGTGGAGGAAGCTGTTGTCCTTCCAC ATGGCTGACGTTGTCAAAGGCGCCCCGCCGCTCGTTGTCCAACTGACGTGGCTCCCTGAAGGCGGAGCCACATTAGCATTCGGATTCAACCACTGTTTGC TCGACGGAGTCGGCAGCTCCAACTTCCTCAACTCGTTTGCTGAGCTGGCATCCAATGGAGGACTAGCGGATATGGAGTTGATGAAACAACCCGTTTGGGA CCGTCACCTTCTCGAGCTTGAGTCGAACTCGAACTCGAGAGTGAGTCATCATCATCCCGAGTTCGGCCAGGTGCCCGATCTCTGCAGCGGCGGGTTTCTA AGCCGATTTTTGAACGAGAAGCTGTTGACTCCGACTTCTGTTATCTTTGACCGACGGAGTCAGGACGAGTTGAAGAGAGTTGCTGAGCTGGCAGCGCCTG CGACCAGGAGAAACGATAATAAAAAGTTCTTCACGTCATTCGAGGTGGTGGCGGCGCATGTGTGGAGGAGCTGGGCGAGGTCGATGGATTTCCCACGGAG CCAAGCCTTGAAGCTGCTGTTCAGCGTGAACGTACGGGACCGAGTCAAACCGAGTGTCCCCGCCGGGTATTACGGGAATGCGTTCGTGCTGGGATGCGCG GAGACGACGGCGGGTGAAATTACGGAAAAGGGGCTGGGACACGTGGCAATGCTGGTGAAGAAGGCGAAGGATAAGGTGGACGACGAGTTCGTTAGGTCGA CGGTGGAATCGGTGAGTTCGGGGAAGGTGCCGGACTCGGTTGGTGTGTTGATTTTGTCGCAGTGGTCAAGGCTCGGGCTGGAGAGGGTTGACTTTGGGTT CGGTAGACCGGTTAGTGTGGGGCCCGTCTGTGTTGATAGGTACTGTTTGATGCTGCCGGTTCATGGCCAGGTGGACGGCGTTAAGGTGACGTTAGCGGTT CCGACTAGCGGGGCCTGCAAGTATGAGTATTTGGTCAAGAGTCCTTGTTCTTCCTGA
AA sequence Show only first row Show all	>Lus10007509 pacid=23176489 polypeptide=Lus10007509 locus=Lus10007509.g ID=Lus10007509.BGIv1.0 annot-version=v1.0 MPATESFVQIFLTAQSGRLVPPFNIIYISPPYPTHLSRTRRFSPPPPPQMANDDDDNNNVAAASPSSVNIKEATVIKPSNPTPSCILPLSSLDSQLFLRF TIEYLFVFNTSSNGVVLQRPLFTNRLKLALSNILVPYYPLAGRVRFSHFNGSSSNNHLEVNCQSQGALFVEAESDSFRLTEFDGRQPNSVSQWRKLLSFH MADVVKGAPPLVVQLTWLPEGGATLAFGFNHCLLDGVGSSNFLNSFAELASNGGLADMELMKQPVWDRHLLELESNSNSRVSHHHPEFGQVPDLCSGGFL SRFLNEKLLTPTSVIFDRRSQDELKRVAELAAPATRRNDNKKFFTSFEVVAAHVWRSWARSMDFPRSQALKLLFSVNVRDRVKPSVPAGYYGNAFVLGCA ETTAGEITEKGLGHVAMLVKKAKDKVDDEFVRSTVESVSSGKVPDSVGVLILSQWSRLGLERVDFGFGRPVSVGPVCVDRYCLMLPVHGQVDGVKVTLAV PTSGACKYEYLVKSPCSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40230			HXXXD-type acyl-transferase fa...		Lus10007509 [exp]	0	1
AT2G40610		ATHEXPALPHA1.11...	expansin A8 (.1)		Lus10034227 [exp]	4.1	0.8323
AT1G75710	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10034522 [exp]	12.2	0.8110
AT5G43700	AUX_IAA	IAA4, ATAUX2-11	indole-3-acetic acid inducible...		Lus10018764 [exp]	12.2	0.8208
AT4G36850			PQ-loop repeat family protein ...		Lus10016795 [exp]	12.6	0.7904
AT3G47640	bHLH	PYE, bHLH047, P...	POPEYE, basic helix-loop-helix...		Lus10008622 [exp]	16.6	0.7855
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10030518 [exp]	17.2	0.8040
AT1G06930			unknown protein		Lus10034209 [exp]	18.7	0.7849
AT2G26980		CIPK3, SnRK3.17	SNF1-RELATED PROTEIN KINASE 3....		Lus10021488 [exp]	19.1	0.6742
AT5G23160			unknown protein		Lus10013437 [exp]	20.8	0.8313
AT2G18300	bHLH	bHLH064, HBI1	basic helix-loop-helix (bHLH) ...		Lus10014300 [exp]	26.5	0.7941

Compare expression of checked genes

Lus10007509 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.