Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11090 74 / 3e-17 AS2 LBD21 LOB domain-containing protein 21 (.1) AT5G66870 63 / 2e-12 AS2 LBD36, ASL1 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1) AT1G65620 58 / 5e-11 AS2 AS2 ASYMMETRIC LEAVES 2, Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) AT5G63090 52 / 6e-09 AS2 LOBB, LOB Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) AT3G27650 48 / 2e-07 AS2 LBD25 LOB domain-containing protein 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028986 [exp] 127 / 5e-38 AT3G11090 185 / 6e-61 LOB domain-containing protein 21 (.1) Lus10022264 [exp] 54 / 1e-09 AT5G63090 223 / 9e-75 Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) Lus10013610 [exp] 55 / 2e-09 AT1G65620 208 / 1e-67 ASYMMETRIC LEAVES 2, Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) Lus10040638 [exp] 49 / 9e-08 AT1G31320 244 / 1e-83 LOB domain-containing protein 4 (.1) Lus10018275 [exp] 48 / 2e-07 AT1G31320 243 / 2e-83 LOB domain-containing protein 4 (.1) Lus10005313 [exp] 47 / 1e-06 AT5G66870 209 / 4e-67 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1) Lus10016769 [exp] 47 / 1e-06 AT5G66870 222 / 3e-71 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1) Lus10009336 [exp] 47 / 1e-06 AT5G66870 170 / 6e-52 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1) Lus10007525 [exp] 46 / 1e-06 AT2G30130 204 / 1e-67 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G186000 [exp] 81 / 7e-20 AT3G11090 178 / 7e-58 LOB domain-containing protein 21 (.1) Potri.008G071500 [exp] 74 / 4e-17 AT3G11090 174 / 4e-56 LOB domain-containing protein 21 (.1) Potri.008G079800 [exp] 54 / 4e-09 AT1G65620 263 / 7e-90 ASYMMETRIC LEAVES 2, Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) Potri.012G083500 [exp] 49 / 1e-07 AT5G63090 223 / 4e-75 Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) Potri.008G072800 [exp] 47 / 5e-07 AT2G30130 229 / 8e-78 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Potri.001G345700 [exp] 46 / 9e-07 AT3G27650 208 / 5e-70 LOB domain-containing protein 25 (.1) Potri.010G177100 [exp] 46 / 1e-06 AT1G65620 288 / 5e-100 ASYMMETRIC LEAVES 2, Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) Potri.015G082200 [exp] 46 / 2e-06 AT5G63090 223 / 4e-75 Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) Potri.T125408 [exp] 43 / 1e-05 AT5G63090 172 / 3e-55 Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007510 pacid=23176514 polypeptide=Lus10007510 locus=Lus10007510.g ID=Lus10007510.BGIv1.0 annot-version=v1.0 ATGGGTGGTGCTTCTTGGCTGCTCCACTCCGAATGCGGGAACCCCTCGATCATTGAGGGGAACTCGCCGAATGTAGTAGCGATCTCAGCAGTGGTGGTGG GAGCAGAAGCAGTACAGCGGAGAAGGCGGGCTCTGGCGATGGCGAGATCGACCTGGAGCTCGACCATCTTTCGCTGGAGCATGGCTATGGCGCCAATGCA GCCGCAGACAGGGGCCACGAGCGCGGGCCAGCGCCGCCACGAGCCTGGCCTCGGCCTCGTAGGCCAGGGAATTCACGGTGTCTTCTCGCTGCTCTTCGGG GACCTCTGTCAGGATCTTGCTCACGTTGCTTGCGCCAAAGACTTTGTGGACTTTGGCGAACTTTTTGGGCTCGTCGGACCGGAAATAGGGGGCGAATATG CAGTTGGATGTGCATCTTCTCTTGAGGAACTTACAGGCTGCGCATGA
AA sequence Show only first row Show all	>Lus10007510 pacid=23176514 polypeptide=Lus10007510 locus=Lus10007510.g ID=Lus10007510.BGIv1.0 annot-version=v1.0 MGGASWLLHSECGNPSIIEGNSPNVVAISAVVVGAEAVQRRRRALAMARSTWSSTIFRWSMAMAPMQPQTGATSAGQRRHEPGLGLVGQGIHGVFSLLFG DLCQDLAHVACAKDFVDFGELFGLVGPEIGGEYAVGCASSLEELTGCA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10007510 [exp]	0	1
AT3G07320			O-Glycosyl hydrolases family 1...		Lus10038211 [exp]	2.4	0.7916
AT5G10750			Protein of unknown function (D...		Lus10020102 [exp]	2.8	0.7881
AT4G04980			unknown protein		Lus10018473 [exp]	5.5	0.7690
AT1G70250			receptor serine/threonine kina...		Lus10008361 [exp]	6.7	0.7868
AT2G34930			disease resistance family prot...		Lus10033931 [exp]	8.0	0.7752
AT5G24090		ATCHIA	chitinase A (.1)		Lus10023535 [exp]	8.9	0.7718
AT4G37810			unknown protein		Lus10011591 [exp]	11.8	0.7494
AT1G07410		ATRAB-A2B, AtRA...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10040255 [exp]	12.6	0.7645
AT1G31880		BRX, NIP3;1, NL...	BREVIS RADIX, DZC (Disease res...		Lus10030349 [exp]	14.7	0.7655
AT1G19780		ATCNGC8	cyclic nucleotide gated channe...		Lus10024073 [exp]	15.9	0.7281

Compare expression of checked genes

Lus10007510 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.