Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29340 373 / 2e-119 ATPUB17, PUB17 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) AT3G46510 367 / 1e-117 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT5G01830 334 / 5e-105 ARM repeat superfamily protein (.1) AT5G42340 295 / 2e-90 PUB15 Plant U-Box 15 (.1) AT1G23030 292 / 1e-89 PUB11 ARM repeat superfamily protein (.1) AT1G71020 288 / 5e-88 ARM repeat superfamily protein (.1.2) AT3G54850 283 / 4e-86 ATPUB14 plant U-box 14 (.1) AT2G28830 284 / 9e-84 AtPUB12 PLANT U-BOX 12 (.1) AT1G60190 276 / 4e-83 AtPUB19 plant U-box 19, ARM repeat superfamily protein (.1) AT5G67340 239 / 3e-69 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017444 [exp] 1230 / 0 AT3G46510 381 / 2e-123 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10007317 [exp] 394 / 3e-127 AT1G29340 899 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) Lus10006090 [exp] 379 / 6e-122 AT5G01830 764 / 0.0 ARM repeat superfamily protein (.1) Lus10025244 [exp] 377 / 1e-121 AT5G01830 765 / 0.0 ARM repeat superfamily protein (.1) Lus10037970 [exp] 349 / 4e-111 AT3G54850 803 / 0.0 plant U-box 14 (.1) Lus10040834 [exp] 342 / 7e-108 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10016565 [exp] 341 / 1e-107 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10029163 [exp] 327 / 6e-102 AT1G60190 571 / 0.0 plant U-box 19, ARM repeat superfamily protein (.1) Lus10013001 [exp] 301 / 2e-92 AT1G60190 562 / 0.0 plant U-box 19, ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G185900 [exp] 966 / 0 AT3G46510 335 / 2e-105 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.008G071600 [exp] 963 / 0 AT3G46510 345 / 2e-109 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.011G071400 [exp] 397 / 1e-128 AT1G29340 888 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) Potri.004G061800 [exp] 379 / 6e-122 AT1G29340 833 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) Potri.009G029600 [exp] 371 / 2e-119 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.016G134000 [exp] 366 / 3e-117 AT5G01830 702 / 0.0 ARM repeat superfamily protein (.1) Potri.006G107600 [exp] 352 / 6e-112 AT5G01830 729 / 0.0 ARM repeat superfamily protein (.1) Potri.001G238500 [exp] 352 / 7e-112 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.008G035700 [exp] 342 / 8e-109 AT3G54850 821 / 0.0 plant U-box 14 (.1) Potri.010G226500 [exp] 342 / 2e-108 AT3G54850 806 / 0.0 plant U-box 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00514 [flax] [poplar] Arm Armadillo/beta-catenin-like repeat CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Lus10007511 pacid=23176501 polypeptide=Lus10007511 locus=Lus10007511.g ID=Lus10007511.BGIv1.0 annot-version=v1.0 ATGGAAGCTGGAATTCCAAATCCTGCTGCAATTCTAAATCCTTCTTCAATCATGATTTCTTCTGCCTTTTTGCCTACAGGAACACTGGTGGAATCAATAA TCCACCTCTCTAATGAAGTCATATCCATGGAGAAGATTCCTTCAGTCCAGTCCAAGAATGTCTCCACCGTGATTCGAAGAATCAAGCTTTTATCGTCTCT GTTCGAGGACATTCAGGATGCCAACACACCGCTCCCTCCATCTTCGATTCTGTGTCTCACGGAGCTTTTCTCGGTCATCAGAAAGGTCAAGCTTTTGATC CAGGAATGCACAGAAGGGAGCTCTCTGTGGTTGCTGATTCAGACCGAAATGTTGTCGAATCAGTTCCATGTCTTGACCAAGGAAATGGGTCGGGCGCTCG ATATCTTGCCGTTGAGTCTGATGAATTTGACTGCTGACACGAGGGAGCAAGTCGAGTTGCTTCACAGGCAAGCGAAGAGAGTTGATGCTTTCGTGGATCC CAAGGAAGTTGAGAGGAAGGAGAGGGTTTTGTTTCTTATGGCTAGGCACAATGATAGAGGGAAAAGTAGGAACAACAAGATTGATTTTGGGGAAGTTAAG GATGTTTTCGACAGGATCGGACTGAGGACCCCGCTTGATTTCGAGGAGGAGATTTTGAAACTGGAAGGGGAAGCTCAGAGACAGGCAGGAACCGGAGGGT TGATCGTGGTTTCCAACATAAACAATCTCATCTCTCTTTTGACATATTCAAAGGCAACGGTGTTTCTTGGAGGAGAAGAAAGGGTTGTTCTTCCAATAAA AGAGGAAACTTTTTCAACAAGGCAGCAACTTTCATCGTCTCCGAACATTCCGGATGAGTTCAAATGTCCGATTTCTCTGGACCTGATGAGGGATCCGGTC ATTGTAGCTTCCGGTCACACTTATGACCGAAGCTCCATCGCTCAGTGGATCAACTCGGGTCACCACACGTGTCCGAAAAGCGGGCAGAGACTTATCCACA TGGCTCTAATTCCTAACTATGCACTCAAGAGCCTAGTTCATCAATGGTGCCAAGAGAACAACATCCCACTAGTTGATGACTCTTCTCCATCTTCTTCCGA AAACGAAACTCGCTGGTACGATACCAGGAACAAGACAGCTGTTGATCATATCTCAGCCACGAAAGCAGCAGTAGATGCTGTGAAAATGACAGCAGAGTTT CTTGTGGGGAAACTAGCAATGGGGTCTCCAGAGGTTCAGAGGCAGGCGGCTTATGAGCTTAGACTACTCGCGAAAACCGGTATGGACAATCGGAGGATCA TCGCAGAGGCAGGAGCGATTCCATTTCTAGTATCAATACTGAACTCAAACGATTCGAGAATCCAAGAGAATGCGGTAACCGCATTGCTGAATCTCTCCAT CCTGGAGAACAACAAGATCCTGATAATGGCGGCAGGAGCGGTCGAGAATATAATATCGGTGCTCGAATCGGGGAAAACAATGGAAGCGAGGGAGAATGCA GCGGCAGCAATATTCAGTCTCTCGGTGATCGACGATTACAAAGTAATAATCGGAGCCAAACCACGAGCGATTCCGGCTTTGTTGAGACTACTGAGAGAAG GAACCACAGCAGGGAAAAGAGATGCTGCTAGTGCATTGTTTAACCTAGCCGTTTACGTGTCCAACAAGGCAGGGATCGTTCTTGCCGGTACGGTACCGTT GCTGGTCGAGCTTCTGATGGATGACAAGGCGGGGATCACGGACGATGCGCTGGCGATTCTGGCCTTGCTGATTGGTTGCTCGGAAGGGTTGGAAGAGATC AGGAAGAGTAGGATTCTTGTGCCTTTGCTGATTGATCTGCTGAGATTCGGGTCAGGGAAAGGGAAAGAGAATTCAATAACTCTGCTTTTGGGACTGTGTA AAGATGGAGGACAGGAGGTTGCTAGACGATTGCTGATAAACCCTAGAAGCATTCCTTCTCTTCAGAGCTTGTCGGCCGATGGAACGCTGAAGGCGAGACG GAAAGCTGATGCCTTGCTTAGAGTGTTGAATAGATGCTGCTCTCATTCTTAG
AA sequence Show only first row Show all	>Lus10007511 pacid=23176501 polypeptide=Lus10007511 locus=Lus10007511.g ID=Lus10007511.BGIv1.0 annot-version=v1.0 MEAGIPNPAAILNPSSIMISSAFLPTGTLVESIIHLSNEVISMEKIPSVQSKNVSTVIRRIKLLSSLFEDIQDANTPLPPSSILCLTELFSVIRKVKLLI QECTEGSSLWLLIQTEMLSNQFHVLTKEMGRALDILPLSLMNLTADTREQVELLHRQAKRVDAFVDPKEVERKERVLFLMARHNDRGKSRNNKIDFGEVK DVFDRIGLRTPLDFEEEILKLEGEAQRQAGTGGLIVVSNINNLISLLTYSKATVFLGGEERVVLPIKEETFSTRQQLSSSPNIPDEFKCPISLDLMRDPV IVASGHTYDRSSIAQWINSGHHTCPKSGQRLIHMALIPNYALKSLVHQWCQENNIPLVDDSSPSSSENETRWYDTRNKTAVDHISATKAAVDAVKMTAEF LVGKLAMGSPEVQRQAAYELRLLAKTGMDNRRIIAEAGAIPFLVSILNSNDSRIQENAVTALLNLSILENNKILIMAAGAVENIISVLESGKTMEARENA AAAIFSLSVIDDYKVIIGAKPRAIPALLRLLREGTTAGKRDAASALFNLAVYVSNKAGIVLAGTVPLLVELLMDDKAGITDDALAILALLIGCSEGLEEI RKSRILVPLLIDLLRFGSGKGKENSITLLLGLCKDGGQEVARRLLINPRSIPSLQSLSADGTLKARRKADALLRVLNRCCSHS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Lus10007511 [exp]	0	1
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Lus10011310 [exp]	2.0	0.9859
AT1G70420			Protein of unknown function (D...		Lus10030612 [exp]	2.4	0.9894
AT2G02010		GAD4	glutamate decarboxylase 4 (.1)		Lus10034426 [exp]	2.4	0.9894
AT2G03340	WRKY	WRKY3	WRKY DNA-binding protein 3 (.1...		Lus10000173 [exp]	3.3	0.9826
AT5G17330		GAD1, GAD	GLUTAMATE DECARBOXYLASE 1, glu...		Lus10034425 [exp]	3.9	0.9873
AT5G36930			Disease resistance protein (TI...		Lus10029921 [exp]	5.7	0.9793
					Lus10019232 [exp]	5.9	0.9852
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10014673 [exp]	6.0	0.9822
AT3G59710			NAD(P)-binding Rossmann-fold s...		Lus10035736 [exp]	6.3	0.9831
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10017981 [exp]	7.4	0.9856

Compare expression of checked genes

Lus10007511 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.