Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56040 1046 / 0 UGP3 UDP-glucose pyrophosphorylase 3 (.1) AT2G35020 47 / 5e-05 GlcNAc1pUT2 N-acetylglucosamine-1-phosphate uridylyltransferase 2 (.1) AT5G52560 44 / 0.0005 ATUSP UDP-sugar pyrophosphorylase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017443 [exp] 1571 / 0 AT3G56040 1100 / 0.0 UDP-glucose pyrophosphorylase 3 (.1) Lus10028658 [exp] 45 / 0.0003 AT5G52560 1030 / 0.0 UDP-sugar pyrophosphorylase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G185800 [exp] 1186 / 0 AT3G56040 1150 / 0.0 UDP-glucose pyrophosphorylase 3 (.1) Potri.002G077400 [exp] 48 / 3e-05 AT5G52560 1040 / 0.0 UDP-sugar pyrophosphorylase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01704 [flax] [poplar] UDPGP UTP--glucose-1-phosphate uridylyltransferase
Representative CDS sequence Show only first row Show all	>Lus10007512 pacid=23176526 polypeptide=Lus10007512 locus=Lus10007512.g ID=Lus10007512.BGIv1.0 annot-version=v1.0 ATGGCGACGGGCTCCGGCGCCGGCAACGCCTCCCTGCTTCACTTTCCGGACTCCAGGCTTCTTGCATTACCCTCTTCATCTTCAAGCTCACTTCTTTTCC GGAGACCTGTAACTACTACTAGTACTACTTCTCTTTCCTTGTGCTCTCCGCATCAGCAGCAAGGATTCCGAATTACCCGCGTCTCCACAGCGACGGTGGA GTGTTCACCTTCAGCTCCTGACGACTTCGATTTCCAGCAAGAGATTTCTCGGCTCAGGTCTCTTCGGTCCAAGCTTGCGGATTGCGGGACTCTCCAAAGG AAGCTGCTTGTGCTGCAGAGTGATTCCTTGGTGAAGCGATTCTTCGAGTGCAGAGGGAATCGGATTATGGAATTGCTTGATTTGGGTTCCGAGGAATTGT TCTTGTTGAAGTGTTTGGTTGCTGCTGGTCAGGAGCACGTGTTTGGATTTGAAAGCGAGGCGATGATGGCGGATTGTAATGGCAGTTCTTTGAAGACTGC TCTGTATTCTTTGGCGGAGATGATCGAGAAGTTTGACTTGGGTCACAACGGTAAACGCCCGTCGTCGGAGCATAATGGGCACGCCGTGGGGAAGAAGCAA GTTGGGGATTTGAAATTGTTATTGAAGAATATGAAGGAGATTGAGAAGTTCTACGATTGCATTGGAGGCATCATTGGATACGAGATAATGGTGCTGGAGC TACTTGCTCAATCAACTAGTGAAAATCAAACGAGAAACTGGTCTCAACATATACATGACACCATGAACTGCCAGTTTCTGGAAATCCATGCGCCTAGTGG GCTTGATCTTTCGAAAGATACTGAGTATGCATCTCAAGCAGCTATGTGGGGAATTGAGGGTCTACCAGATCTTGGAGAAATTTATCCCCTGGGCGGCTCT GCTGATCGTCTAGGTTTGGTAGATCCTGACACAGGCGAATGTCTTCCTGCTGCAATGCTTCCTTACTGCGGGCGGACTTTGTTGGAAGGCCTTATTAGAG ATGTTCAGGCTAGAGAGTTCTTGTACTTCAAGCTCTATGGAAAGCAGTGCATCACACCAGTTGCAATCATGACAAGCCCAGCTAAGAATAACCATGAGCG TGTCACTTCTCTTTGTGAAAGACTCGGGTGGTTTGGAAGAGGTCGTTCCAATTTCCAACTTTTCGAACAGCCTCTTGTTCCCGCTGTTAGTGCTGAAGAT GGCAAGTGGCTGGTTGGGAAACCATTCTCACCTGTATCCAAGCCCGGTGGCCATGGTGTGATTTGGAAACTTGCTTATGATAATGGCATCTTCCAATGGT TTTATGATCACGGGAGGAAAGGTGCTACTGTGCGGCAAGTCAGTAATGTCGCGGCTGCCACAGACTTGACGCTCTTAGCACTGGCTGGGATGGGCCTTCG TCATGGTAAGAAACTGGGATTTGCATCTTGTAAGAGAACGTCGGGTGCTACAGAAGGAATTAACGTCCTTGTTGAGAAAAAGGATCTTAATGGAAAATGG GCTTATGGTTTATCCTGCATTGAATATACCGAGTTCGACAAGTATGGGATAACGAATCAGCCTTTTTCTTCAAACAGATTGCAGGGGTTCCCTGCAAACA CAAACATTATGTATGTGGACTTACCTTCTATAGAGTCAGTAGCATCGAGCAATGATGAAAAATGCTTACCAGGCATGGTACTTAATATAAGGAAACAAAT TCAATATGAGGACCAATGGGGAAACCATCACAGTGTCTCTGGTGGCCGGCTAGAATGCACAATGCAAAATATTGCGGACAACTTTTTGAATACATATTCG TCAAGATACCAGGGTGTGGGAGATGAGTTGGATACATTCATTGTCTATAACGAGCGTAGAAGGGTCACATCTTCGGCTAAGAAGAAGCAAAGTCATGCAG GCACTTCTTTGCACCAGACTCCGGATGGTGCATTATTGGATACCTTACGAAATGCCTATGATCTTCTCTCAAGGTGTGATATTGAACTCCCTGAGATTGA AGGTAATGACAAATATGTTAATTCTGTTCCGCCATTTCTGATACTGCTCCATCCAGCTCTTGGTCCTCTTTGGGAGGTCACGAGACAGAAGTTTACCAAA GGGTCAATATCAAAGGGCTCCGAGTTACAAATTGAGGTTGCTGAGTTTCTCTGGAAGAACGTTAAGCTTAATGGAAGCTTGATAGTTATTGCTGAAAACA TCATGGGCTCAACCAGAATGGATGCACATGGCGAACCATTACTGCATTACGGTCGCAGGTGTGGAAGATGTAGGTTGGAAAATGTAAGCATTTGTAATGA AGGGATTGACTGGAGTTCTTCAGACAATGTATATTGGAAACATAACGTGCGACGAGTCGAGGAATTTAAGGTTGTTCTTCATGGGAACTCCGAATTCGAG GCCTACGATGTCACCATACAGGGAAATCATGTTTTCGAAGTTCCCGACGGCCACAAGATGAAGGTAACTTCAGGAGTTTCAGGTTTGGAAGTCGAGCTCA ACCCTATAGAAGCTAATAAGATTGATAGTGGAAGCTGGTACTGGAACTATAAGGTACAAGGCACACATATCTTACTGGACTTGGTACAGTGCTGA
AA sequence Show only first row Show all	>Lus10007512 pacid=23176526 polypeptide=Lus10007512 locus=Lus10007512.g ID=Lus10007512.BGIv1.0 annot-version=v1.0 MATGSGAGNASLLHFPDSRLLALPSSSSSSLLFRRPVTTTSTTSLSLCSPHQQQGFRITRVSTATVECSPSAPDDFDFQQEISRLRSLRSKLADCGTLQR KLLVLQSDSLVKRFFECRGNRIMELLDLGSEELFLLKCLVAAGQEHVFGFESEAMMADCNGSSLKTALYSLAEMIEKFDLGHNGKRPSSEHNGHAVGKKQ VGDLKLLLKNMKEIEKFYDCIGGIIGYEIMVLELLAQSTSENQTRNWSQHIHDTMNCQFLEIHAPSGLDLSKDTEYASQAAMWGIEGLPDLGEIYPLGGS ADRLGLVDPDTGECLPAAMLPYCGRTLLEGLIRDVQAREFLYFKLYGKQCITPVAIMTSPAKNNHERVTSLCERLGWFGRGRSNFQLFEQPLVPAVSAED GKWLVGKPFSPVSKPGGHGVIWKLAYDNGIFQWFYDHGRKGATVRQVSNVAAATDLTLLALAGMGLRHGKKLGFASCKRTSGATEGINVLVEKKDLNGKW AYGLSCIEYTEFDKYGITNQPFSSNRLQGFPANTNIMYVDLPSIESVASSNDEKCLPGMVLNIRKQIQYEDQWGNHHSVSGGRLECTMQNIADNFLNTYS SRYQGVGDELDTFIVYNERRRVTSSAKKKQSHAGTSLHQTPDGALLDTLRNAYDLLSRCDIELPEIEGNDKYVNSVPPFLILLHPALGPLWEVTRQKFTK GSISKGSELQIEVAEFLWKNVKLNGSLIVIAENIMGSTRMDAHGEPLLHYGRRCGRCRLENVSICNEGIDWSSSDNVYWKHNVRRVEEFKVVLHGNSEFE AYDVTIQGNHVFEVPDGHKMKVTSGVSGLEVELNPIEANKIDSGSWYWNYKVQGTHILLDLVQC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56040		UGP3	UDP-glucose pyrophosphorylase ...		Lus10007512 [exp]	0	1
AT4G35440		CLCE, ATCLC-E, ...	chloride channel E (.1.2)		Lus10026574 [exp]	2.2	0.8427
AT5G46390			Peptidase S41 family protein (...		Lus10004601 [exp]	2.4	0.8466
AT4G33630		EX1	EXECUTER1, Protein of unknown ...		Lus10007064 [exp]	4.9	0.8428
AT1G76730			NagB/RpiA/CoA transferase-like...		Lus10028565 [exp]	5.4	0.8617
AT5G36930			Disease resistance protein (TI...		Lus10004719 [exp]	8.1	0.8224
AT3G23400		FIB4	fibrillin 4, Plastid-lipid ass...		Lus10021209 [exp]	10.0	0.8108
AT5G35220		EGY1	ETHYLENE-DEPENDENT GRAVITROPIS...		Lus10020304 [exp]	10.3	0.8507
AT5G01220		SQD2	sulfoquinovosyldiacylglycerol ...		Lus10002499 [exp]	14.7	0.7594
AT1G20560		AAE1	acyl activating enzyme 1 (.1.2...		Lus10016011 [exp]	15.4	0.8000
AT3G59060	bHLH	PIF5, PIL6	PHYTOCHROME-INTERACTING FACTOR...		Lus10029805 [exp]	16.0	0.7994

Compare expression of checked genes

Lus10007512 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.