Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05520 600 / 0 Outer membrane OMP85 family protein (.1) AT3G11070 594 / 0 Outer membrane OMP85 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017441 [exp] 951 / 0 AT5G05520 597 / 0.0 Outer membrane OMP85 family protein (.1) Lus10040946 [exp] 743 / 0 AT5G05520 627 / 0.0 Outer membrane OMP85 family protein (.1) Lus10009835 [exp] 742 / 0 AT5G05520 625 / 0.0 Outer membrane OMP85 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G071800 [exp] 645 / 0 AT5G05520 626 / 0.0 Outer membrane OMP85 family protein (.1) Potri.010G185600 [exp] 635 / 0 AT5G05520 651 / 0.0 Outer membrane OMP85 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0193 [flax] [poplar] MBB PF01103 [flax] [poplar] Omp85 Omp85 superfamily domain
Representative CDS sequence Show only first row Show all	>Lus10007514 pacid=23176509 polypeptide=Lus10007514 locus=Lus10007514.g ID=Lus10007514.BGIv1.0 annot-version=v1.0 ATGGCGACTCCCGACGAGGTAATACCGGAACCGCCGCCGGAAACCCCCACAGACGACGTCAAAAACGAGAATGCCGGTCCAGAAGTCGACGGAGCACCCG AACCGCGTCTTCGGACAGAACAGGAGAAGCTCGAGGGCCTATTCCGTCGGATGCAGACGCAGAACGTTCCACTTCGAGTCCACGATGTGATCATCGAGGG GAATACGAGAACTAAGGATTACCTAATCGAGGCGGAGATGGCACTGCTTAAGAGCTGCACCACTATGCAGGAGATTATCATGCTCTCCGGAGCTGTCAAT TCGAGGCTGCAAGCCTTGCAGGTATTCGATTCTGTTAAGTTCACGCTCGAGACTGGCCCTCCGGAGCTCCCAGACACTTGCAACGTCTTGGTGGAGGTTG AAGAGGCCCAAACCCGCCTTTCTGGCGAAGTTGGAGCTTACACCAAGGCCGAGGCTGGATCTTCGACTGTTGAAGGAACAATCAAGTACAAGAACATATT TGGCCATGGCGATCTATGGGACGGCTCGTTTGCATACGGTTGGGACCATATGGCAGAGGTAAGTGCCGGTGTGCATGTTCCGAGATTCATAGGATCTTCA ATTCCTTTGAACGTCCGTGCATTCCTGCAATCCCAAGATTTGCTGAAGTTCTCGTCATTCAAAGAGAGGTCCTTGGGCCTCTCTGTTGACCTATTCTCTT CCGGGAACCATGACCTGGCCTACAATCTTGCATGGCGTAACTTGACGGATCCTTCGCAAATGGCATCCAGGTCAGTAAGGAGGCAGCTTGGCCACAGTTT ACTCTCGTCCTTGAAATATACGTTCAAACTTGATAGGAGAGATTCAACTGTCCGGCCACTTCGCGGCTATGCGTTTGCTGCTACCTCTCAAATTGCTGGG CTTGCACCAGATAGTCGTTTCTTGCGCTTCGTACGCCAGGAGGTCGATCTTCGTTGTGCCATCCCTCTCAGATTCCTCAACTCTGCACTAAACTTGGGGA TCTCTGCCGGCGTAGTCTTCCCATGGGGCAATAATGCATCAAACACACCTTCGCCGCTACCCGACAGGTTCTTCTTAGGTGGCAATTCATCTCCAGTTTG CGGTCTCGGTGGGCCAATAACAGTTTGGGGATATCGAACCAGAGGGCTCGGCCCTACCGAGCCTCGAAGGCAACCGAAAACCAATCCCACTGCTACACCT GAAGTCGATTATCTCGGAGGAGATCTTGCTGTGACTGCTTTTGCCGATCTCTCATTTGATTTCCCGCTGAAATGGCTTCAAGAGAGAGGCATTCACGGGC ATGTATTCGCGTCCACCGGAAATCTCGAGAAGCTGACGCAAAACGCCTACAAAAGTTTCACTCTGCAGAAGTTTGCGTCTTCGTTTCGGACCTCGGTGGG CGCTGGGTTCGTTGTTCCGATGCAACCGTTGCGGCTCGAGGTGAATTACTATCATATGTTGAAGAAATTCGCACATGACCAAGGGAGGCCAAAGTTTGGG GTGACCTTCTCTATGTAG
AA sequence Show only first row Show all	>Lus10007514 pacid=23176509 polypeptide=Lus10007514 locus=Lus10007514.g ID=Lus10007514.BGIv1.0 annot-version=v1.0 MATPDEVIPEPPPETPTDDVKNENAGPEVDGAPEPRLRTEQEKLEGLFRRMQTQNVPLRVHDVIIEGNTRTKDYLIEAEMALLKSCTTMQEIIMLSGAVN SRLQALQVFDSVKFTLETGPPELPDTCNVLVEVEEAQTRLSGEVGAYTKAEAGSSTVEGTIKYKNIFGHGDLWDGSFAYGWDHMAEVSAGVHVPRFIGSS IPLNVRAFLQSQDLLKFSSFKERSLGLSVDLFSSGNHDLAYNLAWRNLTDPSQMASRSVRRQLGHSLLSSLKYTFKLDRRDSTVRPLRGYAFAATSQIAG LAPDSRFLRFVRQEVDLRCAIPLRFLNSALNLGISAGVVFPWGNNASNTPSPLPDRFFLGGNSSPVCGLGGPITVWGYRTRGLGPTEPRRQPKTNPTATP EVDYLGGDLAVTAFADLSFDFPLKWLQERGIHGHVFASTGNLEKLTQNAYKSFTLQKFASSFRTSVGAGFVVPMQPLRLEVNYYHMLKKFAHDQGRPKFG VTFSM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05520			Outer membrane OMP85 family pr...		Lus10007514 [exp]	0	1
AT5G60960		PNM1	PPR protein localized to the n...		Lus10017862 [exp]	2.0	0.9311
AT3G56550			Pentatricopeptide repeat (PPR)...		Lus10041326 [exp]	3.2	0.9143
AT1G70280			NHL domain-containing protein ...		Lus10029176 [exp]	3.5	0.9239
AT4G02930			GTP binding Elongation factor ...		Lus10008161 [exp]	3.9	0.9276
AT5G09840			Putative endonuclease or glyco...		Lus10033511 [exp]	4.0	0.9288
AT3G04770		RPSAB	40s ribosomal protein SA B (.1...		Lus10018284 [exp]	5.7	0.9203
AT1G26460			Tetratricopeptide repeat (TPR)...		Lus10004649 [exp]	6.0	0.9256
AT3G02490			Pentatricopeptide repeat (PPR)...		Lus10032092 [exp]	6.5	0.9206
AT3G03060			P-loop containing nucleoside t...		Lus10031211 [exp]	6.7	0.9252
AT3G27550			RNA-binding CRS1 / YhbY (CRM) ...		Lus10022280 [exp]	7.2	0.9104

Compare expression of checked genes

Lus10007514 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.