Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40270 428 / 6e-144 Protein kinase family protein (.1.2) AT3G56050 410 / 6e-137 Protein kinase family protein (.1.2) AT4G18640 379 / 2e-122 MRH1 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) AT5G45840 377 / 4e-121 Leucine-rich repeat protein kinase family protein (.1.2) AT5G58540 337 / 8e-111 Protein kinase superfamily protein (.1.2.3) AT5G07150 324 / 8e-103 Leucine-rich repeat protein kinase family protein (.1) AT1G63430 235 / 5e-68 Leucine-rich repeat protein kinase family protein (.1.2) AT5G41180 223 / 2e-63 leucine-rich repeat transmembrane protein kinase family protein (.1) AT2G20300 153 / 9e-39 ALE2 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) AT5G56890 152 / 3e-38 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017439 [exp] 1162 / 0 AT5G45840 457 / 1e-152 Leucine-rich repeat protein kinase family protein (.1.2) Lus10031860 [exp] 561 / 0 AT5G45840 491 / 4e-166 Leucine-rich repeat protein kinase family protein (.1.2) Lus10031290 [exp] 450 / 6e-150 AT4G18640 457 / 7e-153 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) Lus10025400 [exp] 409 / 5e-134 AT5G45840 608 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10029228 [exp] 359 / 1e-117 AT5G45840 444 / 5e-151 Leucine-rich repeat protein kinase family protein (.1.2) Lus10007281 [exp] 342 / 3e-107 AT5G45840 568 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10015277 [exp] 337 / 1e-106 AT5G45840 548 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10008486 [exp] 254 / 7e-75 AT1G63430 878 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10001489 [exp] 251 / 9e-74 AT1G63430 879 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G072100 [exp] 680 / 0 AT2G40270 451 / 2e-153 Protein kinase family protein (.1.2) Potri.010G185300 [exp] 524 / 4e-179 AT2G40270 434 / 1e-146 Protein kinase family protein (.1.2) Potri.009G075400 [exp] 475 / 3e-159 AT2G40270 449 / 9e-152 Protein kinase family protein (.1.2) Potri.001G280200 [exp] 469 / 7e-157 AT2G40270 430 / 2e-144 Protein kinase family protein (.1.2) Potri.011G067400 [exp] 403 / 4e-131 AT4G18640 678 / 0.0 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) Potri.004G058100 [exp] 396 / 2e-128 AT4G18640 694 / 0.0 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) Potri.001G106600 [exp] 259 / 7e-77 AT1G63430 839 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.003G124800 [exp] 249 / 7e-73 AT1G63430 858 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.010G178050 [exp] 165 / 3e-43 AT5G48380 710 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.010G177900 [exp] 154 / 1e-39 AT5G48380 731 / 0.0 BAK1-interacting receptor-like kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10007516 pacid=23176506 polypeptide=Lus10007516 locus=Lus10007516.g ID=Lus10007516.BGIv1.0 annot-version=v1.0 ATGGAAAAGTCCCGCAAATTCCGATGCTCTGCAGCTCTGCTCCTCAGCTTCTTCCTCTACTGCGACTTGATTCTCTGCTCCTTCTCTCTCGACGCCGAAG GTTTGGCTTTGTTGAAGTTCAAAGCGAGAGTGGTGAGCGATCCGTTCGGTGCTCTGAACGATTGGAAGGATGACGATGGTGAGAACGCCGATCACTGCTC GTGGTTCGGCGTTGGTTGCTCCGATGATGGAAGAGTTGTCTCCCTGAACTTGAGAGATCTATGCCTGGAAGGAACTTTGGCTCCTGAGCTTGGAAAGCTC GTTAATTTAATATCCATTGTTCTGCGCAACAACTCGTTTACTGGCACAATTCCGGAAGGTATTGGCGAGCTGATGGACCTAGAGGTGCTGGATCTAGGGT TCAACAACTTCAGCGGTTCACTTCCTACAAACCTTGGAAGCAATCTATCATTGACGATTCTACTCTTGGATCACAATGGCGTCCTCAACATCTTTTCGCC TGAAATTCATCAACTTATGAAGCTCTCTGAAGTTCAAGTTGATGAGAGTGTACTGTATGATTCAGCAAAGGATGCATCTTGTCACAAAACCAAAGATGCA GCTCAGAGGAGACTTCTACAAACAGTTGATGATCTTTTACCGAATCGGCCACGAGTAGTTCTCCCCCCGAATACCCGGTTCTTCAACCCCTATGTATTCA TACCTCCCCTACCTCCCATTTCTATAGATCCGTCTATTCCGTTCCCAAACATAACTCGTCTATTGCCTCCACCTCCCCCGGCTACCGAATCAACCCAAGA TCCAATTCCACAGCTCCCAGATGCTAACAATCAGACTTCTGCTTCTCCAAATTCGACCGAACCTTCGTTTCCAGCTCCAGCCCCAACGGTCACAAGTCGT CCCAATTCAACAGTTGAAAGTTCCCGTTCAAAGAATCACATCATTGTGCCAATTGCTGCATCTTTAGGGGGTGTTGCATTTCTTCTCTTTGCTATTGCTG GGATGTATCTCTGCAAAACCAAAAGGGCAGCTGTCAAACCTTGGGCTACTGGACTGAGTGGGCAGCTTCAGAAAGCGCTTACAACTGGTGTGCCAAAGCT GAAAAGATCCGAGCTTGAAGCAGCTTGTGAAGATTTCAGTAACGTAATTGGTTCTTCGCCACTTGGTATGTTGTACAAAGGAACTCTGTCAAGCGGGGTT GAAATAGCGGTGGCCTACGTTGCCTTATCTGACAAGGATTGGTCAAGAAATTTGGAAGTACAGTTCGCAAAGAAGATTGAGACATTATCGAAAGTGAATC ACAAGAATTTCATCAACCTTCTCGGGTATTGTGTGGAAGACGAGCCTTTCACAAGGATGTTGGTCTTCGAATATGCTCCTAACGGATCGCTCTTCGAACA TTTGCATATTAAAGAATCCGAACACCTGGACTGGTCGATGCGGCTCAGAATCATGGCGGGCATGGCGTACTGCCTCGAGTACATGCACCAGCTGGACCCA CCAATCGCGCACAACAACTTAGCATCTTCATCCGTCTCTCTCACCGAAGACTACGCAGCCAAACTCTCGGATTTCAGCTTCTCAACCAACTCGACACCTT TGGAAGCATCCGAGACAGAACTCTCGGACATGCCATCGTCGAATATCCCAACCAACGTTTACAGCTTCGGTGTGCTGTTGTTCGAACTGATGACCGGTCG TGTCCCTTACTCGGTCTCCAATAATAACGGATCAGTACAAAACTGGGCATCAGACTACTTGACCGGAGACCGACCCCTCCACCGAATCGTGGACCCAACG CTCGACTCTTTCGAGGCGGAGAAACTCAACTCAATCGAGGAAGTTATAAAGTCGTGCGTTCATCCCGATCCTGTACAAAGACCTACAATGGCAGTAGTTG CGTCGACGATAAGACTAATCACCGGGATAAGCCCTGAAGCTGCCAGCCCGAAACTGTCCCCTCTTTGGTGGGCAGAGCTCGAAATTTTGTCGGCCGATGG GAGCTGA
AA sequence Show only first row Show all	>Lus10007516 pacid=23176506 polypeptide=Lus10007516 locus=Lus10007516.g ID=Lus10007516.BGIv1.0 annot-version=v1.0 MEKSRKFRCSAALLLSFFLYCDLILCSFSLDAEGLALLKFKARVVSDPFGALNDWKDDDGENADHCSWFGVGCSDDGRVVSLNLRDLCLEGTLAPELGKL VNLISIVLRNNSFTGTIPEGIGELMDLEVLDLGFNNFSGSLPTNLGSNLSLTILLLDHNGVLNIFSPEIHQLMKLSEVQVDESVLYDSAKDASCHKTKDA AQRRLLQTVDDLLPNRPRVVLPPNTRFFNPYVFIPPLPPISIDPSIPFPNITRLLPPPPPATESTQDPIPQLPDANNQTSASPNSTEPSFPAPAPTVTSR PNSTVESSRSKNHIIVPIAASLGGVAFLLFAIAGMYLCKTKRAAVKPWATGLSGQLQKALTTGVPKLKRSELEAACEDFSNVIGSSPLGMLYKGTLSSGV EIAVAYVALSDKDWSRNLEVQFAKKIETLSKVNHKNFINLLGYCVEDEPFTRMLVFEYAPNGSLFEHLHIKESEHLDWSMRLRIMAGMAYCLEYMHQLDP PIAHNNLASSSVSLTEDYAAKLSDFSFSTNSTPLEASETELSDMPSSNIPTNVYSFGVLLFELMTGRVPYSVSNNNGSVQNWASDYLTGDRPLHRIVDPT LDSFEAEKLNSIEEVIKSCVHPDPVQRPTMAVVASTIRLITGISPEAASPKLSPLWWAELEILSADGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45840			Leucine-rich repeat protein ki...		Lus10007516 [exp]	0	1
AT3G24050	GATA	GATA1	GATA transcription factor 1 (....		Lus10023684 [exp]	4.0	0.7953
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Lus10010172 [exp]	4.2	0.7967
AT5G42440			Protein kinase superfamily pro...		Lus10015344 [exp]	8.9	0.7612
AT5G10530			Concanavalin A-like lectin pro...		Lus10020446 [exp]	11.0	0.7672
AT3G14470			NB-ARC domain-containing disea...		Lus10000417 [exp]	11.0	0.7373
AT1G14290		SBH2	sphingoid base hydroxylase 2 (...		Lus10012832 [exp]	12.7	0.7528
AT5G02290		NAK	Protein kinase superfamily pro...		Lus10023794 [exp]	17.0	0.7689
AT5G04020			calmodulin binding (.1)		Lus10031023 [exp]	18.2	0.6452
AT1G70780			unknown protein		Lus10035084 [exp]	20.2	0.7211
AT5G11000			Plant protein of unknown funct...		Lus10017128 [exp]	23.0	0.7515

Compare expression of checked genes

Lus10007516 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.