Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58530 150 / 2e-44 Glutaredoxin family protein (.1) AT5G13810 133 / 1e-37 Glutaredoxin family protein (.1) AT5G39865 134 / 3e-37 Glutaredoxin family protein (.1) AT2G41330 133 / 1e-36 Glutaredoxin family protein (.1) AT3G57070 133 / 2e-36 Glutaredoxin family protein (.1) AT3G28850 117 / 1e-30 Glutaredoxin family protein (.1) AT3G11773 110 / 4e-30 Thioredoxin superfamily protein (.1.2) AT5G06470 108 / 8e-29 Glutaredoxin family protein (.1) AT5G01420 110 / 4e-28 Glutaredoxin family protein (.1) AT1G64500 99 / 4e-24 Glutaredoxin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017438 [exp] 272 / 6e-93 AT5G58530 132 / 1e-37 Glutaredoxin family protein (.1) Lus10040949 [exp] 272 / 7e-93 AT5G58530 164 / 2e-50 Glutaredoxin family protein (.1) Lus10009838 [exp] 204 / 7e-62 AT5G05450 721 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10039537 [exp] 140 / 2e-40 AT5G13810 261 / 4e-87 Glutaredoxin family protein (.1) Lus10024164 [exp] 139 / 7e-40 AT5G13810 259 / 2e-86 Glutaredoxin family protein (.1) Lus10001669 [exp] 134 / 9e-38 AT5G39865 340 / 1e-115 Glutaredoxin family protein (.1) Lus10017335 [exp] 126 / 1e-34 AT5G39865 345 / 1e-117 Glutaredoxin family protein (.1) Lus10007256 [exp] 125 / 2e-33 AT5G39865 358 / 1e-121 Glutaredoxin family protein (.1) Lus10018025 [exp] 124 / 2e-33 AT3G57070 293 / 2e-96 Glutaredoxin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G072200 [exp] 235 / 3e-78 AT5G58530 177 / 7e-55 Glutaredoxin family protein (.1) Potri.009G075600 [exp] 187 / 4e-59 AT5G58530 199 / 3e-63 Glutaredoxin family protein (.1) Potri.001G280400 [exp] 177 / 2e-55 AT5G58530 234 / 4e-77 Glutaredoxin family protein (.1) Potri.001G026600 [exp] 140 / 8e-41 AT5G13810 312 / 1e-107 Glutaredoxin family protein (.1) Potri.006G041800 [exp] 140 / 2e-39 AT3G57070 340 / 3e-114 Glutaredoxin family protein (.1) Potri.016G038600 [exp] 139 / 8e-39 AT3G57070 317 / 5e-105 Glutaredoxin family protein (.1) Potri.003G198100 [exp] 135 / 1e-38 AT5G13810 294 / 1e-100 Glutaredoxin family protein (.1) Potri.T125406 [exp] 135 / 1e-38 AT5G13810 294 / 1e-100 Glutaredoxin family protein (.1) Potri.010G243700 [exp] 113 / 2e-29 AT5G01420 213 / 3e-65 Glutaredoxin family protein (.1) Potri.017G081600 [exp] 114 / 3e-29 AT3G28850 355 / 3e-119 Glutaredoxin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00462 [flax] [poplar] Glutaredoxin Glutaredoxin
Representative CDS sequence Show only first row Show all	>Lus10007517 pacid=23176513 polypeptide=Lus10007517 locus=Lus10007517.g ID=Lus10007517.BGIv1.0 annot-version=v1.0 ATGTGGCCGGAGTGGCTATCGTCGCCAACGAGGGTTACTCCCCCGTCTTCTTCATCAACGGCAATCTCTACTCCGGCGCACAAGAAGAAGTTCTCCTGCT CCTCTTTCAAAGACATCCAAACGCTAATCTCCGAGCCCGACTATGCCTCCTCTTCACCTTCAATCTCCCCCAGAGCCCCTTCAATCTTCCACCGCGTCCG GTTCTCCACCTCCGTCCTCCGCTACCTCCGCAAATCTCTCCCTCCTCCGGCGCCACAGGCGCCGGAGTGCGTCGTCCTCTACTTCACCAGCCTCCGCGTG GTGCGCAGGACTTACGAGGACTGCCGCACTGTCAGATCGATCCTCCGCGGGATCCGCGCCCCGACCGACGAGCGAGATCTGTCCATGGACGGCAAGTACC TAGACGAGCTGCAGAAGATCCTGCCAGCTGTCACATTGCCGGTGGTGCTGATCGGCGGGAAATGCATTGTCGGCGTGGAGCGGATCAGGGAGCTGCACGA GAGCGGAGAGCTGAAGAAGATGATTGGAGTGCTGCCGCCTGCGTCGGACGAGTGCGATCTGTGTGGAGGGCTGAGATTTGTGCTGTGTGAGCTGTGCAGC GGGAGTCACAAGATCTACTCGGAGAAGCAGGGGTTTAGGAGCTGTACGGAGTGTAATGTCAACGGGCTGATCCGCTGCCCCGATTGCTACCCTGTTTCCC GCCGGCGGATGTCGATCGCGTAG
AA sequence Show only first row Show all	>Lus10007517 pacid=23176513 polypeptide=Lus10007517 locus=Lus10007517.g ID=Lus10007517.BGIv1.0 annot-version=v1.0 MWPEWLSSPTRVTPPSSSSTAISTPAHKKKFSCSSFKDIQTLISEPDYASSSPSISPRAPSIFHRVRFSTSVLRYLRKSLPPPAPQAPECVVLYFTSLRV VRRTYEDCRTVRSILRGIRAPTDERDLSMDGKYLDELQKILPAVTLPVVLIGGKCIVGVERIRELHESGELKKMIGVLPPASDECDLCGGLRFVLCELCS GSHKIYSEKQGFRSCTECNVNGLIRCPDCYPVSRRRMSIA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58530			Glutaredoxin family protein (....		Lus10007517 [exp]	0	1
AT5G58530			Glutaredoxin family protein (....		Lus10017438 [exp]	1.4	0.8486
AT2G13690			PRLI-interacting factor, putat...		Lus10020892 [exp]	1.4	0.8379
AT5G47740			Adenine nucleotide alpha hydro...		Lus10019487 [exp]	3.9	0.8193
AT2G41130	bHLH	bHLH106	basic helix-loop-helix (bHLH) ...		Lus10018020 [exp]	6.0	0.7985
AT5G47750		PK5, D6PKL2	D6 protein kinase like 2 (.1)		Lus10038753 [exp]	10.4	0.8168
AT2G39700		ATHEXPALPHA1.6,...	expansin A4 (.1)		Lus10016533 [exp]	10.5	0.8020
AT2G36570			Leucine-rich repeat protein ki...		Lus10017178 [exp]	11.5	0.8251
AT5G10080			Eukaryotic aspartyl protease f...		Lus10016434 [exp]	11.5	0.7527
AT1G74690		IQD31	IQ-domain 31 (.1)		Lus10004263 [exp]	13.3	0.8248
AT3G22440			FRIGIDA-like protein (.1)		Lus10010560 [exp]	15.2	0.8146

Compare expression of checked genes

Lus10007517 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.